Hb_003209_050

Information

Type -
Description -
Location Contig3209: 45005-46003
Sequence    

Annotation

kegg
ID rcu:RCOM_1621590
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP41276.1
description hypothetical protein JCGZ_15683 [Jatropha curcas]
swissprot
ID Q9SJZ3
description Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1
trembl
ID A0A067KYL0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15683 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003209_050 0.0 - - hypothetical protein JCGZ_15683 [Jatropha curcas]
2 Hb_128051_010 0.2232814255 - - -
3 Hb_002282_040 0.2703378139 - - hypothetical protein VITISV_030841 [Vitis vinifera]
4 Hb_109268_010 0.2800200836 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
5 Hb_096224_020 0.2871629913 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
6 Hb_000693_020 0.2995588513 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
7 Hb_001022_060 0.3085049394 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
8 Hb_006615_070 0.3147355158 - - hypothetical protein RCOM_1466910 [Ricinus communis]
9 Hb_021888_090 0.3155615329 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 isoform X1 [Malus domestica]
10 Hb_139138_010 0.318004169 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
11 Hb_000077_240 0.3181599455 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
12 Hb_003398_030 0.325757842 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
13 Hb_000208_030 0.3268608227 - - -
14 Hb_001277_210 0.3305875608 - - -
15 Hb_006907_120 0.3324560861 - - PREDICTED: uncharacterized protein LOC103327233 [Prunus mume]
16 Hb_000049_240 0.3368397553 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
17 Hb_007558_020 0.3399292232 - - hypothetical protein JCGZ_17631 [Jatropha curcas]
18 Hb_006816_400 0.3403609982 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
19 Hb_000749_080 0.3421741882 - - Alpha-expansin 12 precursor, putative [Ricinus communis]
20 Hb_012379_010 0.3464277815 - - -

Gene co-expression network

sample Hb_003209_050 Hb_003209_050 Hb_128051_010 Hb_128051_010 Hb_003209_050--Hb_128051_010 Hb_002282_040 Hb_002282_040 Hb_003209_050--Hb_002282_040 Hb_109268_010 Hb_109268_010 Hb_003209_050--Hb_109268_010 Hb_096224_020 Hb_096224_020 Hb_003209_050--Hb_096224_020 Hb_000693_020 Hb_000693_020 Hb_003209_050--Hb_000693_020 Hb_001022_060 Hb_001022_060 Hb_003209_050--Hb_001022_060 Hb_128051_010--Hb_109268_010 Hb_128051_010--Hb_001022_060 Hb_000077_240 Hb_000077_240 Hb_128051_010--Hb_000077_240 Hb_139138_010 Hb_139138_010 Hb_128051_010--Hb_139138_010 Hb_003398_030 Hb_003398_030 Hb_128051_010--Hb_003398_030 Hb_002282_040--Hb_096224_020 Hb_002282_040--Hb_000693_020 Hb_003020_080 Hb_003020_080 Hb_002282_040--Hb_003020_080 Hb_002282_040--Hb_128051_010 Hb_003322_010 Hb_003322_010 Hb_002282_040--Hb_003322_010 Hb_109268_010--Hb_001022_060 Hb_005779_050 Hb_005779_050 Hb_109268_010--Hb_005779_050 Hb_109268_010--Hb_096224_020 Hb_109268_010--Hb_000077_240 Hb_109268_010--Hb_003398_030 Hb_096224_020--Hb_128051_010 Hb_004525_060 Hb_004525_060 Hb_096224_020--Hb_004525_060 Hb_096224_020--Hb_005779_050 Hb_096224_020--Hb_003020_080 Hb_006816_400 Hb_006816_400 Hb_000693_020--Hb_006816_400 Hb_004116_130 Hb_004116_130 Hb_000693_020--Hb_004116_130 Hb_000454_060 Hb_000454_060 Hb_000693_020--Hb_000454_060 Hb_000693_020--Hb_128051_010 Hb_013399_010 Hb_013399_010 Hb_000693_020--Hb_013399_010 Hb_001022_060--Hb_005779_050 Hb_001022_060--Hb_096224_020 Hb_001022_060--Hb_139138_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.322078 0.217129 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.257429 0.303375 0 0.0838838 0

CAGE analysis