Hb_003209_130

Information

Type -
Description -
Location Contig3209: 75685-79309
Sequence    

Annotation

kegg
ID pop:POPTR_0008s09300g
description POPTRDRAFT_1084806; leucine-rich repeat family protein
nr
ID XP_012067749.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A067KYR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15684 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33929: 75679-79289 , PASA_asmbl_33930: 78550-79111 , PASA_asmbl_33931: 76779-77089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003209_130 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
2 Hb_002486_050 0.0604020813 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
3 Hb_000256_230 0.0611964532 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
4 Hb_000665_170 0.0669080053 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
5 Hb_005535_080 0.0724239382 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
6 Hb_000622_110 0.0779959432 - - cmp-sialic acid transporter, putative [Ricinus communis]
7 Hb_004126_040 0.078681074 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005977_100 0.0799784935 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
9 Hb_003777_030 0.0801804869 - - Exocyst complex component, putative [Ricinus communis]
10 Hb_007919_110 0.0805375194 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
11 Hb_001250_050 0.0820357726 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
12 Hb_000134_120 0.0870262929 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
13 Hb_005062_110 0.089405195 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
14 Hb_000389_030 0.0922206682 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
15 Hb_010672_020 0.0934260249 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
16 Hb_006120_050 0.0941392789 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
17 Hb_002272_240 0.0941966079 - - catalytic, putative [Ricinus communis]
18 Hb_011310_110 0.0945320891 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
19 Hb_000753_160 0.0948960012 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
20 Hb_001677_200 0.095609472 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003209_130 Hb_003209_130 Hb_002486_050 Hb_002486_050 Hb_003209_130--Hb_002486_050 Hb_000256_230 Hb_000256_230 Hb_003209_130--Hb_000256_230 Hb_000665_170 Hb_000665_170 Hb_003209_130--Hb_000665_170 Hb_005535_080 Hb_005535_080 Hb_003209_130--Hb_005535_080 Hb_000622_110 Hb_000622_110 Hb_003209_130--Hb_000622_110 Hb_004126_040 Hb_004126_040 Hb_003209_130--Hb_004126_040 Hb_002486_050--Hb_000256_230 Hb_005062_110 Hb_005062_110 Hb_002486_050--Hb_005062_110 Hb_002486_050--Hb_000622_110 Hb_002486_050--Hb_000665_170 Hb_000085_260 Hb_000085_260 Hb_002486_050--Hb_000085_260 Hb_000256_230--Hb_000665_170 Hb_000389_030 Hb_000389_030 Hb_000256_230--Hb_000389_030 Hb_000256_230--Hb_004126_040 Hb_000256_230--Hb_000622_110 Hb_003777_030 Hb_003777_030 Hb_000665_170--Hb_003777_030 Hb_010672_020 Hb_010672_020 Hb_000665_170--Hb_010672_020 Hb_007545_010 Hb_007545_010 Hb_000665_170--Hb_007545_010 Hb_000665_170--Hb_000389_030 Hb_005381_020 Hb_005381_020 Hb_005535_080--Hb_005381_020 Hb_005535_080--Hb_002486_050 Hb_000395_040 Hb_000395_040 Hb_005535_080--Hb_000395_040 Hb_005535_080--Hb_000622_110 Hb_007919_110 Hb_007919_110 Hb_005535_080--Hb_007919_110 Hb_000622_110--Hb_005062_110 Hb_000926_340 Hb_000926_340 Hb_000622_110--Hb_000926_340 Hb_086639_080 Hb_086639_080 Hb_000622_110--Hb_086639_080 Hb_004126_040--Hb_000389_030 Hb_004126_040--Hb_000665_170 Hb_004126_040--Hb_000622_110 Hb_003878_200 Hb_003878_200 Hb_004126_040--Hb_003878_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.445 31.4992 44.2554 85.7852 19.6159 20.1727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9364 16.909 15.133 25.1102 33.864

CAGE analysis