Hb_003209_160

Information

Type -
Description -
Location Contig3209: 88074-89598
Sequence    

Annotation

kegg
ID pop:POPTR_0008s09330g
description POPTRDRAFT_564278; SNAP25 homologous protein SNAP30
nr
ID XP_011018220.1
description PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
swissprot
ID Q9LMG8
description Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=3 SV=1
trembl
ID A9PB46
description SNAP25 homologous protein SNAP30 OS=Populus trichocarpa GN=POPTR_0008s09330g PE=2 SV=1
Gene Ontology
ID GO:0016043
description snap25 homologous protein snap30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003209_160 0.0 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
2 Hb_007545_020 0.1817854055 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Nicotiana tomentosiformis]
3 Hb_164370_010 0.2832898593 - - -
4 Hb_002490_050 0.2913073321 - - Os02g0182500, partial [Oryza sativa Japonica Group]
5 Hb_005356_060 0.2991997256 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
6 Hb_050286_020 0.3135320559 - - -
7 Hb_138652_020 0.3186734377 - - -
8 Hb_000101_280 0.3388123383 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
9 Hb_021068_010 0.3397995129 - - PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
10 Hb_028755_010 0.3425292885 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
11 Hb_001846_050 0.3456943563 - - -
12 Hb_176022_010 0.3468086792 - - -
13 Hb_007827_020 0.3481229004 - - -
14 Hb_024272_010 0.3504012742 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
15 Hb_000939_010 0.3509821765 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
16 Hb_001160_010 0.3527398008 - - -
17 Hb_041813_070 0.355364045 - - -
18 Hb_000831_040 0.358058172 - - -
19 Hb_004738_050 0.361137178 - - F-box/leucine rich repeat protein, putative [Ricinus communis]
20 Hb_007933_020 0.3678540206 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003209_160 Hb_003209_160 Hb_007545_020 Hb_007545_020 Hb_003209_160--Hb_007545_020 Hb_164370_010 Hb_164370_010 Hb_003209_160--Hb_164370_010 Hb_002490_050 Hb_002490_050 Hb_003209_160--Hb_002490_050 Hb_005356_060 Hb_005356_060 Hb_003209_160--Hb_005356_060 Hb_050286_020 Hb_050286_020 Hb_003209_160--Hb_050286_020 Hb_138652_020 Hb_138652_020 Hb_003209_160--Hb_138652_020 Hb_028755_010 Hb_028755_010 Hb_007545_020--Hb_028755_010 Hb_007545_020--Hb_164370_010 Hb_001846_050 Hb_001846_050 Hb_007545_020--Hb_001846_050 Hb_001965_010 Hb_001965_010 Hb_007545_020--Hb_001965_010 Hb_010317_030 Hb_010317_030 Hb_007545_020--Hb_010317_030 Hb_002141_040 Hb_002141_040 Hb_164370_010--Hb_002141_040 Hb_164370_010--Hb_028755_010 Hb_004738_050 Hb_004738_050 Hb_164370_010--Hb_004738_050 Hb_002639_060 Hb_002639_060 Hb_164370_010--Hb_002639_060 Hb_176022_010 Hb_176022_010 Hb_002490_050--Hb_176022_010 Hb_038675_010 Hb_038675_010 Hb_002490_050--Hb_038675_010 Hb_059069_010 Hb_059069_010 Hb_002490_050--Hb_059069_010 Hb_000195_050 Hb_000195_050 Hb_002490_050--Hb_000195_050 Hb_011360_100 Hb_011360_100 Hb_002490_050--Hb_011360_100 Hb_009265_020 Hb_009265_020 Hb_002490_050--Hb_009265_020 Hb_001160_010 Hb_001160_010 Hb_005356_060--Hb_001160_010 Hb_021068_010 Hb_021068_010 Hb_005356_060--Hb_021068_010 Hb_004361_020 Hb_004361_020 Hb_005356_060--Hb_004361_020 Hb_001019_120 Hb_001019_120 Hb_005356_060--Hb_001019_120 Hb_000101_280 Hb_000101_280 Hb_005356_060--Hb_000101_280 Hb_165078_010 Hb_165078_010 Hb_050286_020--Hb_165078_010 Hb_015930_010 Hb_015930_010 Hb_050286_020--Hb_015930_010 Hb_007827_020 Hb_007827_020 Hb_050286_020--Hb_007827_020 Hb_009486_010 Hb_009486_010 Hb_050286_020--Hb_009486_010 Hb_000270_500 Hb_000270_500 Hb_050286_020--Hb_000270_500 Hb_050286_020--Hb_001846_050 Hb_057746_010 Hb_057746_010 Hb_138652_020--Hb_057746_010 Hb_037605_010 Hb_037605_010 Hb_138652_020--Hb_037605_010 Hb_012194_010 Hb_012194_010 Hb_138652_020--Hb_012194_010 Hb_006275_030 Hb_006275_030 Hb_138652_020--Hb_006275_030 Hb_000574_020 Hb_000574_020 Hb_138652_020--Hb_000574_020 Hb_002463_080 Hb_002463_080 Hb_138652_020--Hb_002463_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.851989 0 0 0 0.0911463 1.50714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.240803 0.0176642 0.624194

CAGE analysis