Hb_003211_020

Information

Type -
Description -
Location Contig3211: 13734-16247
Sequence    

Annotation

kegg
ID pop:POPTR_0005s09280g
description POPTRDRAFT_558673; hypothetical protein
nr
ID XP_012070557.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Jatropha curcas]
swissprot
ID P0C8Q6
description Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana GN=At5g08310 PE=3 SV=1
trembl
ID A0A067LCU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10136 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33965: 13673-16424
cDNA
(Sanger)
(ID:Location)		 011_I09.ab1: 13673-14320 , 011_K03.ab1: 13673-14397

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003211_020 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Jatropha curcas]
2 Hb_000331_670 0.059709619 - - PREDICTED: protein tipD [Jatropha curcas]
3 Hb_001838_060 0.0653553753 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
4 Hb_001157_040 0.0655409403 - - casein kinase, putative [Ricinus communis]
5 Hb_001818_070 0.0660272701 - - carbon catabolite repressor protein, putative [Ricinus communis]
6 Hb_004684_010 0.076814452 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
7 Hb_009178_030 0.0776256298 - - conserved hypothetical protein [Ricinus communis]
8 Hb_015934_040 0.0792419114 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
9 Hb_000016_250 0.081176292 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
10 Hb_000866_220 0.0815352705 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
11 Hb_000173_490 0.0824640291 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
12 Hb_002110_150 0.082607492 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
13 Hb_013399_100 0.0838446967 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010618_010 0.0844194922 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
15 Hb_000538_270 0.0844226137 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
16 Hb_021576_110 0.0847234905 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
17 Hb_007416_180 0.0848187844 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
18 Hb_001248_060 0.0848941687 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002686_030 0.0857392231 - - PREDICTED: uncharacterized protein LOC105632635 isoform X1 [Jatropha curcas]
20 Hb_008725_260 0.0874868026 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]

Gene co-expression network

sample Hb_003211_020 Hb_003211_020 Hb_000331_670 Hb_000331_670 Hb_003211_020--Hb_000331_670 Hb_001838_060 Hb_001838_060 Hb_003211_020--Hb_001838_060 Hb_001157_040 Hb_001157_040 Hb_003211_020--Hb_001157_040 Hb_001818_070 Hb_001818_070 Hb_003211_020--Hb_001818_070 Hb_004684_010 Hb_004684_010 Hb_003211_020--Hb_004684_010 Hb_009178_030 Hb_009178_030 Hb_003211_020--Hb_009178_030 Hb_015934_040 Hb_015934_040 Hb_000331_670--Hb_015934_040 Hb_000331_670--Hb_001157_040 Hb_007163_120 Hb_007163_120 Hb_000331_670--Hb_007163_120 Hb_013399_100 Hb_013399_100 Hb_000331_670--Hb_013399_100 Hb_021576_110 Hb_021576_110 Hb_000331_670--Hb_021576_110 Hb_001838_060--Hb_001157_040 Hb_001329_160 Hb_001329_160 Hb_001838_060--Hb_001329_160 Hb_000976_310 Hb_000976_310 Hb_001838_060--Hb_000976_310 Hb_001838_060--Hb_007163_120 Hb_001838_060--Hb_001818_070 Hb_001838_060--Hb_000331_670 Hb_000866_220 Hb_000866_220 Hb_001157_040--Hb_000866_220 Hb_000563_320 Hb_000563_320 Hb_001157_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_001157_040--Hb_000016_250 Hb_000538_270 Hb_000538_270 Hb_001157_040--Hb_000538_270 Hb_140506_010 Hb_140506_010 Hb_001818_070--Hb_140506_010 Hb_011491_010 Hb_011491_010 Hb_001818_070--Hb_011491_010 Hb_004767_050 Hb_004767_050 Hb_001818_070--Hb_004767_050 Hb_048219_010 Hb_048219_010 Hb_001818_070--Hb_048219_010 Hb_007416_180 Hb_007416_180 Hb_004684_010--Hb_007416_180 Hb_002311_040 Hb_002311_040 Hb_004684_010--Hb_002311_040 Hb_003464_060 Hb_003464_060 Hb_004684_010--Hb_003464_060 Hb_000768_040 Hb_000768_040 Hb_004684_010--Hb_000768_040 Hb_015807_070 Hb_015807_070 Hb_004684_010--Hb_015807_070 Hb_004724_060 Hb_004724_060 Hb_004684_010--Hb_004724_060 Hb_008725_260 Hb_008725_260 Hb_009178_030--Hb_008725_260 Hb_007532_030 Hb_007532_030 Hb_009178_030--Hb_007532_030 Hb_085863_030 Hb_085863_030 Hb_009178_030--Hb_085863_030 Hb_009178_030--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_009178_030--Hb_000003_250 Hb_001014_030 Hb_001014_030 Hb_009178_030--Hb_001014_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.700531 1.06544 0.676979 0.495131 0.606288 1.14884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.755151 0.967334 1.15928 0.669459 0.499421

CAGE analysis