Hb_003211_030

Information

Type -
Description -
Location Contig3211: 17070-19661
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33966: 19001-20285
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003211_030 0.0 - - -
2 Hb_000392_160 0.1177559483 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
3 Hb_000309_050 0.1280351779 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
4 Hb_000183_030 0.1383597109 - - PREDICTED: probable zinc transporter protein DDB_G0291141 [Populus euphratica]
5 Hb_002611_010 0.1386313328 - - amino acid transporter, putative [Ricinus communis]
6 Hb_001138_060 0.1404543432 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
7 Hb_000656_310 0.1404969347 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
8 Hb_000676_200 0.1430858215 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
9 Hb_003089_020 0.1462458315 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
10 Hb_001723_060 0.1488186644 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
11 Hb_003517_070 0.1495275821 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
12 Hb_003544_010 0.1495865577 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_000941_150 0.1499707954 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
14 Hb_010288_060 0.1505465911 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
15 Hb_002768_060 0.1514721907 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
16 Hb_000186_050 0.1525195302 - - PREDICTED: uncharacterized protein LOC105649281 [Jatropha curcas]
17 Hb_000946_110 0.1525735271 - - GTP cyclohydrolase I, putative [Ricinus communis]
18 Hb_002374_250 0.153297351 - - conserved hypothetical protein [Ricinus communis]
19 Hb_140459_010 0.1537299915 - - thioredoxin f-type, putative [Ricinus communis]
20 Hb_000484_010 0.1539546912 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]

Gene co-expression network

sample Hb_003211_030 Hb_003211_030 Hb_000392_160 Hb_000392_160 Hb_003211_030--Hb_000392_160 Hb_000309_050 Hb_000309_050 Hb_003211_030--Hb_000309_050 Hb_000183_030 Hb_000183_030 Hb_003211_030--Hb_000183_030 Hb_002611_010 Hb_002611_010 Hb_003211_030--Hb_002611_010 Hb_001138_060 Hb_001138_060 Hb_003211_030--Hb_001138_060 Hb_000656_310 Hb_000656_310 Hb_003211_030--Hb_000656_310 Hb_000392_160--Hb_000183_030 Hb_003517_070 Hb_003517_070 Hb_000392_160--Hb_003517_070 Hb_000484_010 Hb_000484_010 Hb_000392_160--Hb_000484_010 Hb_002025_030 Hb_002025_030 Hb_000392_160--Hb_002025_030 Hb_001975_150 Hb_001975_150 Hb_000392_160--Hb_001975_150 Hb_000803_320 Hb_000803_320 Hb_000392_160--Hb_000803_320 Hb_000185_220 Hb_000185_220 Hb_000309_050--Hb_000185_220 Hb_003206_110 Hb_003206_110 Hb_000309_050--Hb_003206_110 Hb_004480_100 Hb_004480_100 Hb_000309_050--Hb_004480_100 Hb_000309_050--Hb_001975_150 Hb_000504_180 Hb_000504_180 Hb_000309_050--Hb_000504_180 Hb_000297_120 Hb_000297_120 Hb_000309_050--Hb_000297_120 Hb_000183_030--Hb_000484_010 Hb_000941_150 Hb_000941_150 Hb_000183_030--Hb_000941_150 Hb_001865_070 Hb_001865_070 Hb_000183_030--Hb_001865_070 Hb_000183_030--Hb_002025_030 Hb_015292_060 Hb_015292_060 Hb_000183_030--Hb_015292_060 Hb_002611_010--Hb_003517_070 Hb_000613_070 Hb_000613_070 Hb_002611_010--Hb_000613_070 Hb_001080_300 Hb_001080_300 Hb_002611_010--Hb_001080_300 Hb_138585_080 Hb_138585_080 Hb_002611_010--Hb_138585_080 Hb_009674_050 Hb_009674_050 Hb_002611_010--Hb_009674_050 Hb_030959_010 Hb_030959_010 Hb_002611_010--Hb_030959_010 Hb_001723_060 Hb_001723_060 Hb_001138_060--Hb_001723_060 Hb_002762_110 Hb_002762_110 Hb_001138_060--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001138_060--Hb_009778_060 Hb_001195_450 Hb_001195_450 Hb_001138_060--Hb_001195_450 Hb_000318_130 Hb_000318_130 Hb_001138_060--Hb_000318_130 Hb_000077_150 Hb_000077_150 Hb_001138_060--Hb_000077_150 Hb_001226_140 Hb_001226_140 Hb_000656_310--Hb_001226_140 Hb_000465_280 Hb_000465_280 Hb_000656_310--Hb_000465_280 Hb_000656_310--Hb_000504_180 Hb_022092_030 Hb_022092_030 Hb_000656_310--Hb_022092_030 Hb_000656_310--Hb_001080_300 Hb_000656_310--Hb_138585_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31524 2.65965 0.98512 4.24809 1.57684 1.2704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.70076 2.12161 4.3191 3.95916 10.3548

CAGE analysis