Hb_003211_040

Information

Type -
Description -
Location Contig3211: 19926-26156
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22390g
description POPTRDRAFT_770481; dentin sialophosphoprotein
nr
ID XP_012072938.1
description PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
swissprot
ID Q9M3G7
description Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1
trembl
ID A0A067KMD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08407 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33966: 19001-20285 , PASA_asmbl_33967: 21234-23134 , PASA_asmbl_33968: 23154-25919 , PASA_asmbl_33969: 25958-26140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003211_040 0.0 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
2 Hb_007576_210 0.0717687631 - - PREDICTED: protein furry homolog [Jatropha curcas]
3 Hb_002095_070 0.0727350223 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
4 Hb_011947_050 0.0728653831 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
5 Hb_003119_080 0.0749145045 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
6 Hb_002909_120 0.0752380644 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
7 Hb_009486_170 0.0753671984 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
8 Hb_174865_020 0.076593191 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
9 Hb_014497_020 0.0778107441 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
10 Hb_011609_150 0.0796816 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
11 Hb_003284_030 0.0821700644 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
12 Hb_000949_010 0.0826119082 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
13 Hb_011689_030 0.0833389765 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
14 Hb_000086_690 0.0841512101 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
15 Hb_001133_030 0.0847864416 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
16 Hb_000665_230 0.0865833168 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
17 Hb_005656_040 0.0867659125 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_002333_050 0.0870751422 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
19 Hb_007632_010 0.089436554 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
20 Hb_001699_280 0.0943085909 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]

Gene co-expression network

sample Hb_003211_040 Hb_003211_040 Hb_007576_210 Hb_007576_210 Hb_003211_040--Hb_007576_210 Hb_002095_070 Hb_002095_070 Hb_003211_040--Hb_002095_070 Hb_011947_050 Hb_011947_050 Hb_003211_040--Hb_011947_050 Hb_003119_080 Hb_003119_080 Hb_003211_040--Hb_003119_080 Hb_002909_120 Hb_002909_120 Hb_003211_040--Hb_002909_120 Hb_009486_170 Hb_009486_170 Hb_003211_040--Hb_009486_170 Hb_007576_210--Hb_009486_170 Hb_014497_020 Hb_014497_020 Hb_007576_210--Hb_014497_020 Hb_001699_280 Hb_001699_280 Hb_007576_210--Hb_001699_280 Hb_007632_010 Hb_007632_010 Hb_007576_210--Hb_007632_010 Hb_002333_050 Hb_002333_050 Hb_007576_210--Hb_002333_050 Hb_000261_150 Hb_000261_150 Hb_002095_070--Hb_000261_150 Hb_000083_070 Hb_000083_070 Hb_002095_070--Hb_000083_070 Hb_000836_020 Hb_000836_020 Hb_002095_070--Hb_000836_020 Hb_003805_050 Hb_003805_050 Hb_002095_070--Hb_003805_050 Hb_001085_030 Hb_001085_030 Hb_002095_070--Hb_001085_030 Hb_174865_020 Hb_174865_020 Hb_011947_050--Hb_174865_020 Hb_000949_010 Hb_000949_010 Hb_011947_050--Hb_000949_010 Hb_003284_030 Hb_003284_030 Hb_011947_050--Hb_003284_030 Hb_011947_050--Hb_007576_210 Hb_011947_050--Hb_002333_050 Hb_003119_080--Hb_002909_120 Hb_011609_150 Hb_011609_150 Hb_003119_080--Hb_011609_150 Hb_000406_020 Hb_000406_020 Hb_003119_080--Hb_000406_020 Hb_000086_690 Hb_000086_690 Hb_003119_080--Hb_000086_690 Hb_000046_190 Hb_000046_190 Hb_003119_080--Hb_000046_190 Hb_002909_120--Hb_002333_050 Hb_002909_120--Hb_000046_190 Hb_002909_120--Hb_009486_170 Hb_188063_010 Hb_188063_010 Hb_002909_120--Hb_188063_010 Hb_001133_030 Hb_001133_030 Hb_002909_120--Hb_001133_030 Hb_009486_170--Hb_001133_030 Hb_009486_170--Hb_002333_050 Hb_003805_040 Hb_003805_040 Hb_009486_170--Hb_003805_040 Hb_000665_230 Hb_000665_230 Hb_009486_170--Hb_000665_230 Hb_009486_170--Hb_000086_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.97254 21.7445 5.34331 7.68902 13.5796 11.5203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25922 3.3757 9.53286 15.3592 16.9941

CAGE analysis