Hb_003211_050

Information

Type -
Description -
Location Contig3211: 65278-67569
Sequence    

Annotation

kegg
ID rcu:RCOM_1068860
description RNA-binding region-containing protein, putative
nr
ID XP_012073739.1
description PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
swissprot
ID Q9M1S3
description Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1
trembl
ID A0A067LNV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06665 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna recognition motif-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33971: 64917-67520 , PASA_asmbl_33972: 64880-67546 , PASA_asmbl_33973: 65626-67442
cDNA
(Sanger)
(ID:Location)		 003_O07.ab1: 65777-67546 , 004_B18.ab1: 65626-67442 , 004_N23.ab1: 65645-67433 , 004_P01.ab1: 65687-67442 , 015_N04.ab1: 65633-67353 , 016_D20.ab1: 66258-67546 , 027_I07.ab1: 65686-67433 , 031_F04.ab1: 65617-67358 , 043_L14.ab1: 65681-67433 , 048_F22.ab1: 65707-67442 , 051_D15.ab1: 65606-67353 , 053_D14.ab1: 66502-67427

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003211_050 0.0 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
2 Hb_001276_060 0.1076880201 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
3 Hb_003050_070 0.1185908945 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011671_400 0.1242469073 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
5 Hb_072912_020 0.125184648 - - abhydrolase domain containing, putative [Ricinus communis]
6 Hb_000714_010 0.1291434957 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
7 Hb_003095_070 0.1305357167 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
8 Hb_009838_040 0.1356523252 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
9 Hb_001507_070 0.1360021767 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001102_250 0.1382058925 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
11 Hb_078633_010 0.138722752 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
12 Hb_000387_060 0.1388022468 - - -
13 Hb_000329_660 0.1392212543 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
14 Hb_000544_110 0.1430541679 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
15 Hb_005000_160 0.1470804275 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
16 Hb_001959_260 0.1475527902 - - -
17 Hb_000215_180 0.1508327709 - - hypothetical protein 17 [Hevea brasiliensis]
18 Hb_005137_020 0.1508862548 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
19 Hb_000106_100 0.1516741794 - - -
20 Hb_000613_160 0.154841267 - - coated vesicle membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003211_050 Hb_003211_050 Hb_001276_060 Hb_001276_060 Hb_003211_050--Hb_001276_060 Hb_003050_070 Hb_003050_070 Hb_003211_050--Hb_003050_070 Hb_011671_400 Hb_011671_400 Hb_003211_050--Hb_011671_400 Hb_072912_020 Hb_072912_020 Hb_003211_050--Hb_072912_020 Hb_000714_010 Hb_000714_010 Hb_003211_050--Hb_000714_010 Hb_003095_070 Hb_003095_070 Hb_003211_050--Hb_003095_070 Hb_001276_060--Hb_003095_070 Hb_001276_060--Hb_011671_400 Hb_005000_160 Hb_005000_160 Hb_001276_060--Hb_005000_160 Hb_000788_080 Hb_000788_080 Hb_001276_060--Hb_000788_080 Hb_009838_040 Hb_009838_040 Hb_001276_060--Hb_009838_040 Hb_003050_070--Hb_000714_010 Hb_000567_280 Hb_000567_280 Hb_003050_070--Hb_000567_280 Hb_104010_010 Hb_104010_010 Hb_003050_070--Hb_104010_010 Hb_010166_020 Hb_010166_020 Hb_003050_070--Hb_010166_020 Hb_149683_010 Hb_149683_010 Hb_003050_070--Hb_149683_010 Hb_078633_010 Hb_078633_010 Hb_011671_400--Hb_078633_010 Hb_002260_090 Hb_002260_090 Hb_011671_400--Hb_002260_090 Hb_011671_400--Hb_003095_070 Hb_003052_040 Hb_003052_040 Hb_011671_400--Hb_003052_040 Hb_011671_400--Hb_005000_160 Hb_000544_110 Hb_000544_110 Hb_072912_020--Hb_000544_110 Hb_005137_020 Hb_005137_020 Hb_072912_020--Hb_005137_020 Hb_001102_250 Hb_001102_250 Hb_072912_020--Hb_001102_250 Hb_072912_020--Hb_078633_010 Hb_004297_040 Hb_004297_040 Hb_072912_020--Hb_004297_040 Hb_001268_080 Hb_001268_080 Hb_072912_020--Hb_001268_080 Hb_000250_010 Hb_000250_010 Hb_000714_010--Hb_000250_010 Hb_000714_010--Hb_010166_020 Hb_003777_230 Hb_003777_230 Hb_000714_010--Hb_003777_230 Hb_000714_010--Hb_149683_010 Hb_003095_070--Hb_001102_250 Hb_003095_070--Hb_000788_080 Hb_005908_040 Hb_005908_040 Hb_003095_070--Hb_005908_040 Hb_003095_070--Hb_072912_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.4879 1.53535 1.29241 11.1901 14.6352 15.0613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
240.549 250.085 121.488 19.782 1.05279

CAGE analysis