Hb_003212_010

Information

Type -
Description -
Location Contig3212: 20287-25114
Sequence    

Annotation

kegg
ID rcu:RCOM_1584370
description sucrose transport protein, putative
nr
ID ABK60191.1
description sucrose transporter 4 [Hevea brasiliensis]
swissprot
ID Q9FE59
description Sucrose transport protein SUC4 OS=Arabidopsis thaliana GN=SUC4 PE=1 SV=2
trembl
ID A0T060
description Sucrose transporter 4 OS=Hevea brasiliensis GN=SUT4 PE=2 SV=1
Gene Ontology
ID GO:0005887
description sucrose transport protein suc4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33975: 20421-39943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003212_010 0.0 - - sucrose transporter 4 [Hevea brasiliensis]
2 Hb_000264_340 0.0811460845 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
3 Hb_000059_080 0.1067563537 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
4 Hb_003767_010 0.1199790911 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
5 Hb_000597_080 0.1200549101 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
6 Hb_109489_010 0.1289538383 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
7 Hb_005470_040 0.1324659071 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
8 Hb_000377_160 0.1432706489 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
9 Hb_054865_030 0.1441455071 - - -
10 Hb_001971_020 0.1441625071 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
11 Hb_002420_010 0.1441741932 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
12 Hb_000917_120 0.145581884 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002308_060 0.1491577932 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]
14 Hb_006120_030 0.1511917805 - - -
15 Hb_002217_200 0.1522334339 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
16 Hb_123560_050 0.1525036218 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
17 Hb_132515_010 0.1537049243 - - phosphoprotein phosphatase, putative [Ricinus communis]
18 Hb_004713_050 0.1539843352 - - RecName: Full=Beta-amyrin synthase [Betula platyphylla]
19 Hb_007320_020 0.1547934371 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
20 Hb_029866_110 0.1570547331 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_003212_010 Hb_003212_010 Hb_000264_340 Hb_000264_340 Hb_003212_010--Hb_000264_340 Hb_000059_080 Hb_000059_080 Hb_003212_010--Hb_000059_080 Hb_003767_010 Hb_003767_010 Hb_003212_010--Hb_003767_010 Hb_000597_080 Hb_000597_080 Hb_003212_010--Hb_000597_080 Hb_109489_010 Hb_109489_010 Hb_003212_010--Hb_109489_010 Hb_005470_040 Hb_005470_040 Hb_003212_010--Hb_005470_040 Hb_000264_340--Hb_005470_040 Hb_000264_340--Hb_109489_010 Hb_123560_050 Hb_123560_050 Hb_000264_340--Hb_123560_050 Hb_000264_340--Hb_000597_080 Hb_001971_020 Hb_001971_020 Hb_000264_340--Hb_001971_020 Hb_007320_020 Hb_007320_020 Hb_000059_080--Hb_007320_020 Hb_000059_080--Hb_003767_010 Hb_000059_080--Hb_000264_340 Hb_000059_080--Hb_005470_040 Hb_000059_080--Hb_109489_010 Hb_000377_160 Hb_000377_160 Hb_003767_010--Hb_000377_160 Hb_000649_280 Hb_000649_280 Hb_003767_010--Hb_000649_280 Hb_029866_110 Hb_029866_110 Hb_003767_010--Hb_029866_110 Hb_002217_200 Hb_002217_200 Hb_003767_010--Hb_002217_200 Hb_003767_010--Hb_123560_050 Hb_003767_010--Hb_109489_010 Hb_000917_120 Hb_000917_120 Hb_000597_080--Hb_000917_120 Hb_001607_070 Hb_001607_070 Hb_000597_080--Hb_001607_070 Hb_009659_040 Hb_009659_040 Hb_000597_080--Hb_009659_040 Hb_008111_010 Hb_008111_010 Hb_000597_080--Hb_008111_010 Hb_006120_030 Hb_006120_030 Hb_000597_080--Hb_006120_030 Hb_109489_010--Hb_005470_040 Hb_109489_010--Hb_123560_050 Hb_109489_010--Hb_029866_110 Hb_000808_220 Hb_000808_220 Hb_109489_010--Hb_000808_220 Hb_031949_010 Hb_031949_010 Hb_005470_040--Hb_031949_010 Hb_001357_360 Hb_001357_360 Hb_005470_040--Hb_001357_360 Hb_005470_040--Hb_000377_160 Hb_005470_040--Hb_123560_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.162546 29.5775 4.03369 14.5007 0.168657 0.128252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.188634 0.106009 1.56065 36.9987 31.2043

CAGE analysis