Hb_003213_010

Information

Type -
Description -
Location Contig3213: 73632-77281
Sequence    

Annotation

kegg
ID rcu:RCOM_0851160
description clasp, putative
nr
ID XP_012081820.1
description PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
swissprot
ID Q3TYG6
description Protein FAM179A OS=Mus musculus GN=Fam179a PE=2 SV=1
trembl
ID A0A067LLU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09618 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33983: 74611-74817
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003213_010 0.0 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
2 Hb_000173_310 0.0533362463 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
3 Hb_001723_150 0.0616914314 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
4 Hb_000300_260 0.0697288503 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
5 Hb_000649_230 0.0730958962 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
6 Hb_004312_010 0.0766588096 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
7 Hb_002272_050 0.077523674 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
8 Hb_006132_110 0.0781511815 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004096_180 0.0785136453 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
10 Hb_000359_040 0.0795151516 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002872_030 0.0815110774 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
12 Hb_000010_110 0.0870157076 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
13 Hb_000789_320 0.0876424685 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
14 Hb_073973_130 0.088923333 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
15 Hb_002163_050 0.0890096294 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]
16 Hb_003861_060 0.0899058274 - - PREDICTED: treacle protein [Jatropha curcas]
17 Hb_001953_070 0.0911193304 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
18 Hb_000086_170 0.0917654757 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
19 Hb_171900_090 0.0918367884 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000096_120 0.0919823373 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]

Gene co-expression network

sample Hb_003213_010 Hb_003213_010 Hb_000173_310 Hb_000173_310 Hb_003213_010--Hb_000173_310 Hb_001723_150 Hb_001723_150 Hb_003213_010--Hb_001723_150 Hb_000300_260 Hb_000300_260 Hb_003213_010--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_003213_010--Hb_000649_230 Hb_004312_010 Hb_004312_010 Hb_003213_010--Hb_004312_010 Hb_002272_050 Hb_002272_050 Hb_003213_010--Hb_002272_050 Hb_000173_310--Hb_001723_150 Hb_000173_310--Hb_000300_260 Hb_000173_310--Hb_004312_010 Hb_002572_020 Hb_002572_020 Hb_000173_310--Hb_002572_020 Hb_002413_010 Hb_002413_010 Hb_000173_310--Hb_002413_010 Hb_001723_150--Hb_000300_260 Hb_001723_150--Hb_002272_050 Hb_003861_060 Hb_003861_060 Hb_001723_150--Hb_003861_060 Hb_018790_020 Hb_018790_020 Hb_001723_150--Hb_018790_020 Hb_000300_260--Hb_004312_010 Hb_012565_070 Hb_012565_070 Hb_000300_260--Hb_012565_070 Hb_000086_170 Hb_000086_170 Hb_000300_260--Hb_000086_170 Hb_000392_230 Hb_000392_230 Hb_000649_230--Hb_000392_230 Hb_010315_060 Hb_010315_060 Hb_000649_230--Hb_010315_060 Hb_027428_010 Hb_027428_010 Hb_000649_230--Hb_027428_010 Hb_073973_130 Hb_073973_130 Hb_000649_230--Hb_073973_130 Hb_022132_050 Hb_022132_050 Hb_000649_230--Hb_022132_050 Hb_006132_110 Hb_006132_110 Hb_004312_010--Hb_006132_110 Hb_004312_010--Hb_000086_170 Hb_006615_050 Hb_006615_050 Hb_004312_010--Hb_006615_050 Hb_000875_080 Hb_000875_080 Hb_002272_050--Hb_000875_080 Hb_171900_090 Hb_171900_090 Hb_002272_050--Hb_171900_090 Hb_000336_210 Hb_000336_210 Hb_002272_050--Hb_000336_210 Hb_000359_040 Hb_000359_040 Hb_002272_050--Hb_000359_040 Hb_005271_040 Hb_005271_040 Hb_002272_050--Hb_005271_040 Hb_000297_160 Hb_000297_160 Hb_002272_050--Hb_000297_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.899 12.4924 22.6981 13.864 11.5037 9.83315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2319 13.3071 10.3118 8.46699 7.24418

CAGE analysis