Hb_003216_020

Information

Type transcription factor
Description TF Family: Orphans
Location Contig3216: 22954-33372
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16260g
description POPTRDRAFT_775135; hypothetical protein
nr
ID XP_012081431.1
description PREDICTED: histidine kinase 2 [Jatropha curcas]
swissprot
ID Q9C5U2
description Histidine kinase 2 OS=Arabidopsis thaliana GN=AHK2 PE=1 SV=1
trembl
ID A0A067KDH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18473 PE=4 SV=1
Gene Ontology
ID GO:0005622
description histidine kinase 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33988: 23125-23605 , PASA_asmbl_33989: 26982-27784 , PASA_asmbl_33990: 28916-29517 , PASA_asmbl_33991: 29595-29797 , PASA_asmbl_33992: 31091-32754 , PASA_asmbl_33993: 33428-33626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003216_020 0.0 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
2 Hb_055531_010 0.1317501132 - - PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Pyrus x bretschneideri]
3 Hb_032050_070 0.1320101966 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
4 Hb_000991_110 0.137834657 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
5 Hb_001628_030 0.1580941081 - - PREDICTED: uncharacterized protein LOC105629266 isoform X1 [Jatropha curcas]
6 Hb_009510_050 0.1581897822 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000723_060 0.1647577735 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
8 Hb_006550_010 0.1654409875 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
9 Hb_082870_010 0.1687067105 - - Disease resistance protein RFL1, putative [Ricinus communis]
10 Hb_003602_090 0.1713846734 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
11 Hb_001277_420 0.1745820761 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
12 Hb_000914_110 0.1747412497 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
13 Hb_000137_030 0.1799663906 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Citrus sinensis]
14 Hb_160459_030 0.1805536464 - - PREDICTED: uncharacterized protein LOC105648122 [Jatropha curcas]
15 Hb_010573_040 0.1813500981 - - PREDICTED: zinc-metallopeptidase, peroxisomal isoform X2 [Populus euphratica]
16 Hb_001897_030 0.1814332544 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
17 Hb_003864_020 0.1818173945 - - kinase, putative [Ricinus communis]
18 Hb_038718_010 0.1831760938 - - Disease resistance protein RFL1, putative [Ricinus communis]
19 Hb_005389_090 0.1835281801 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
20 Hb_002676_110 0.1837750093 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 2-like [Gossypium raimondii]

Gene co-expression network

sample Hb_003216_020 Hb_003216_020 Hb_055531_010 Hb_055531_010 Hb_003216_020--Hb_055531_010 Hb_032050_070 Hb_032050_070 Hb_003216_020--Hb_032050_070 Hb_000991_110 Hb_000991_110 Hb_003216_020--Hb_000991_110 Hb_001628_030 Hb_001628_030 Hb_003216_020--Hb_001628_030 Hb_009510_050 Hb_009510_050 Hb_003216_020--Hb_009510_050 Hb_000723_060 Hb_000723_060 Hb_003216_020--Hb_000723_060 Hb_001277_420 Hb_001277_420 Hb_055531_010--Hb_001277_420 Hb_002235_370 Hb_002235_370 Hb_055531_010--Hb_002235_370 Hb_006550_010 Hb_006550_010 Hb_055531_010--Hb_006550_010 Hb_012727_010 Hb_012727_010 Hb_055531_010--Hb_012727_010 Hb_148346_010 Hb_148346_010 Hb_055531_010--Hb_148346_010 Hb_019040_010 Hb_019040_010 Hb_032050_070--Hb_019040_010 Hb_003602_090 Hb_003602_090 Hb_032050_070--Hb_003602_090 Hb_032050_070--Hb_001628_030 Hb_032050_070--Hb_009510_050 Hb_032050_070--Hb_000723_060 Hb_006573_060 Hb_006573_060 Hb_000991_110--Hb_006573_060 Hb_001897_030 Hb_001897_030 Hb_000991_110--Hb_001897_030 Hb_005389_090 Hb_005389_090 Hb_000991_110--Hb_005389_090 Hb_000991_110--Hb_000723_060 Hb_002049_030 Hb_002049_030 Hb_000991_110--Hb_002049_030 Hb_007313_050 Hb_007313_050 Hb_000991_110--Hb_007313_050 Hb_041145_010 Hb_041145_010 Hb_001628_030--Hb_041145_010 Hb_036356_010 Hb_036356_010 Hb_001628_030--Hb_036356_010 Hb_001628_030--Hb_002049_030 Hb_133845_010 Hb_133845_010 Hb_001628_030--Hb_133845_010 Hb_138705_010 Hb_138705_010 Hb_001628_030--Hb_138705_010 Hb_009510_050--Hb_003602_090 Hb_006615_180 Hb_006615_180 Hb_009510_050--Hb_006615_180 Hb_082870_010 Hb_082870_010 Hb_009510_050--Hb_082870_010 Hb_117127_010 Hb_117127_010 Hb_009510_050--Hb_117127_010 Hb_009510_050--Hb_000723_060 Hb_017604_020 Hb_017604_020 Hb_009510_050--Hb_017604_020 Hb_000723_060--Hb_006615_180 Hb_000101_140 Hb_000101_140 Hb_000723_060--Hb_000101_140 Hb_000723_060--Hb_003602_090 Hb_002239_030 Hb_002239_030 Hb_000723_060--Hb_002239_030 Hb_000137_030 Hb_000137_030 Hb_000723_060--Hb_000137_030 Hb_000656_370 Hb_000656_370 Hb_000723_060--Hb_000656_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0507725 3.30336 1.28502 2.88255 0.0503542 0.332962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0149359 0.950423 0.150001

CAGE analysis