Hb_003216_050

Information

Type -
Description -
Location Contig3216: 56580-60570
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16270g
description POPTRDRAFT_1099983; hypothetical protein
nr
ID XP_012081432.1
description PREDICTED: OBERON-like protein [Jatropha curcas]
swissprot
ID Q9LUB7
description Protein OBERON 2 OS=Arabidopsis thaliana GN=OBE2 PE=1 SV=1
trembl
ID A0A067K199
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18476 PE=4 SV=1
Gene Ontology
ID GO:0008270
description oberon-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33995: 61120-67505 , PASA_asmbl_34001: 56656-104131 , PASA_asmbl_34015: 57922-58265
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003216_050 0.0 - - PREDICTED: OBERON-like protein [Jatropha curcas]
2 Hb_005568_130 0.1081388789 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
3 Hb_001662_170 0.1107132836 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
4 Hb_001053_200 0.1187258543 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
5 Hb_008103_100 0.1203437827 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
6 Hb_001409_050 0.1275098766 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000649_300 0.1285690413 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
8 Hb_004106_010 0.1298883296 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
9 Hb_011360_090 0.1358829025 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
10 Hb_032202_050 0.1372894993 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
11 Hb_004712_160 0.1403500246 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
12 Hb_005496_160 0.1406169625 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
13 Hb_002534_050 0.1447240287 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
14 Hb_001951_240 0.1460985138 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
15 Hb_009040_010 0.1471130152 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
16 Hb_003752_120 0.1473777348 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
17 Hb_012787_040 0.147702084 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
18 Hb_004032_310 0.1507175819 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
19 Hb_000610_060 0.154116174 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
20 Hb_093177_010 0.1544289793 - - Phosphoprotein phosphatase [Theobroma cacao]

Gene co-expression network

sample Hb_003216_050 Hb_003216_050 Hb_005568_130 Hb_005568_130 Hb_003216_050--Hb_005568_130 Hb_001662_170 Hb_001662_170 Hb_003216_050--Hb_001662_170 Hb_001053_200 Hb_001053_200 Hb_003216_050--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_003216_050--Hb_008103_100 Hb_001409_050 Hb_001409_050 Hb_003216_050--Hb_001409_050 Hb_000649_300 Hb_000649_300 Hb_003216_050--Hb_000649_300 Hb_005568_130--Hb_001662_170 Hb_000163_230 Hb_000163_230 Hb_005568_130--Hb_000163_230 Hb_002774_150 Hb_002774_150 Hb_005568_130--Hb_002774_150 Hb_004032_310 Hb_004032_310 Hb_005568_130--Hb_004032_310 Hb_003752_120 Hb_003752_120 Hb_005568_130--Hb_003752_120 Hb_004106_010 Hb_004106_010 Hb_001662_170--Hb_004106_010 Hb_012787_040 Hb_012787_040 Hb_001662_170--Hb_012787_040 Hb_001662_170--Hb_004032_310 Hb_001662_170--Hb_001053_200 Hb_001662_170--Hb_003752_120 Hb_011360_090 Hb_011360_090 Hb_001662_170--Hb_011360_090 Hb_001053_200--Hb_008103_100 Hb_001951_240 Hb_001951_240 Hb_001053_200--Hb_001951_240 Hb_001053_200--Hb_000649_300 Hb_005496_160 Hb_005496_160 Hb_001053_200--Hb_005496_160 Hb_001053_200--Hb_004032_310 Hb_008103_100--Hb_001662_170 Hb_008103_100--Hb_012787_040 Hb_008103_100--Hb_004106_010 Hb_000803_060 Hb_000803_060 Hb_008103_100--Hb_000803_060 Hb_005724_050 Hb_005724_050 Hb_001409_050--Hb_005724_050 Hb_001409_050--Hb_001053_200 Hb_000732_230 Hb_000732_230 Hb_001409_050--Hb_000732_230 Hb_001409_050--Hb_001951_240 Hb_000008_430 Hb_000008_430 Hb_001409_050--Hb_000008_430 Hb_000649_300--Hb_005496_160 Hb_002874_170 Hb_002874_170 Hb_000649_300--Hb_002874_170 Hb_000649_300--Hb_001951_240 Hb_002910_010 Hb_002910_010 Hb_000649_300--Hb_002910_010 Hb_002073_020 Hb_002073_020 Hb_000649_300--Hb_002073_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7229 154.262 64.9289 46.4708 19.5143 24.8581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.85473 2.62102 2.8068 28.2989 21.7463

CAGE analysis