Hb_003216_100

Information

Type -
Description -
Location Contig3216: 98245-101528
Sequence    

Annotation

kegg
ID tcc:TCM_002335
description F17A17.10 protein
nr
ID XP_012081442.1
description PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DL81
description F17A17.10 protein OS=Theobroma cacao GN=TCM_002335 PE=4 SV=1
Gene Ontology
ID GO:0016301
description dual specificity protein kinase spla

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33994: 98383-99750 , PASA_asmbl_33996: 98383-101527 , PASA_asmbl_33997: 98297-101451 , PASA_asmbl_33999: 98383-101595 , PASA_asmbl_34001: 56656-104131 , PASA_asmbl_34016: 100649-100807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003216_100 0.0 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
2 Hb_000883_050 0.0899311027 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
3 Hb_001248_080 0.0947764075 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
4 Hb_005333_130 0.0962091043 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000923_070 0.0963181425 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000531_020 0.0969190049 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
7 Hb_007101_150 0.1007438427 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
8 Hb_001587_020 0.1015704712 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
9 Hb_005694_080 0.1025777283 - - DNA-directed RNA polymerase III, putative [Ricinus communis]
10 Hb_000099_060 0.1028122405 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
11 Hb_007943_090 0.1064369877 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
12 Hb_007672_010 0.1067148905 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
13 Hb_008289_060 0.1067622432 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
14 Hb_004951_040 0.1075566835 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
15 Hb_001109_020 0.1078639117 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008453_090 0.1079296045 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
17 Hb_155764_020 0.1082416453 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
18 Hb_000134_330 0.109712779 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
19 Hb_023386_080 0.1097303956 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
20 Hb_003018_200 0.1101132241 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003216_100 Hb_003216_100 Hb_000883_050 Hb_000883_050 Hb_003216_100--Hb_000883_050 Hb_001248_080 Hb_001248_080 Hb_003216_100--Hb_001248_080 Hb_005333_130 Hb_005333_130 Hb_003216_100--Hb_005333_130 Hb_000923_070 Hb_000923_070 Hb_003216_100--Hb_000923_070 Hb_000531_020 Hb_000531_020 Hb_003216_100--Hb_000531_020 Hb_007101_150 Hb_007101_150 Hb_003216_100--Hb_007101_150 Hb_011794_070 Hb_011794_070 Hb_000883_050--Hb_011794_070 Hb_001109_020 Hb_001109_020 Hb_000883_050--Hb_001109_020 Hb_003927_130 Hb_003927_130 Hb_000883_050--Hb_003927_130 Hb_001427_120 Hb_001427_120 Hb_000883_050--Hb_001427_120 Hb_000703_140 Hb_000703_140 Hb_000883_050--Hb_000703_140 Hb_000260_080 Hb_000260_080 Hb_000883_050--Hb_000260_080 Hb_155764_020 Hb_155764_020 Hb_001248_080--Hb_155764_020 Hb_003398_120 Hb_003398_120 Hb_001248_080--Hb_003398_120 Hb_148930_010 Hb_148930_010 Hb_001248_080--Hb_148930_010 Hb_004724_160 Hb_004724_160 Hb_001248_080--Hb_004724_160 Hb_001998_050 Hb_001998_050 Hb_001248_080--Hb_001998_050 Hb_000563_240 Hb_000563_240 Hb_001248_080--Hb_000563_240 Hb_008453_090 Hb_008453_090 Hb_005333_130--Hb_008453_090 Hb_003018_200 Hb_003018_200 Hb_005333_130--Hb_003018_200 Hb_000634_100 Hb_000634_100 Hb_005333_130--Hb_000634_100 Hb_004951_040 Hb_004951_040 Hb_005333_130--Hb_004951_040 Hb_023386_080 Hb_023386_080 Hb_005333_130--Hb_023386_080 Hb_000836_070 Hb_000836_070 Hb_000923_070--Hb_000836_070 Hb_000376_050 Hb_000376_050 Hb_000923_070--Hb_000376_050 Hb_002307_030 Hb_002307_030 Hb_000923_070--Hb_002307_030 Hb_001243_050 Hb_001243_050 Hb_000923_070--Hb_001243_050 Hb_000956_010 Hb_000956_010 Hb_000923_070--Hb_000956_010 Hb_000025_530 Hb_000025_530 Hb_000531_020--Hb_000025_530 Hb_000531_020--Hb_000260_080 Hb_000531_020--Hb_000883_050 Hb_000531_020--Hb_000703_140 Hb_000260_050 Hb_000260_050 Hb_000531_020--Hb_000260_050 Hb_001828_090 Hb_001828_090 Hb_000531_020--Hb_001828_090 Hb_007101_150--Hb_001828_090 Hb_000056_340 Hb_000056_340 Hb_007101_150--Hb_000056_340 Hb_001512_070 Hb_001512_070 Hb_007101_150--Hb_001512_070 Hb_001257_080 Hb_001257_080 Hb_007101_150--Hb_001257_080 Hb_007101_150--Hb_003018_200 Hb_007741_050 Hb_007741_050 Hb_007101_150--Hb_007741_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
144.389 67.0371 51.1565 37.3773 157.615 174.467
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
243.521 430.702 294.598 57.9425 13.6634

CAGE analysis