Hb_003216_110

Information

Type -
Description -
Location Contig3216: 119943-123566
Sequence    

Annotation

kegg
ID rcu:RCOM_0416040
description expressed protein, putative
nr
ID XP_012081445.1
description PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
swissprot
ID Q9SJ40
description Vacuolar protein-sorting-associated protein 11 homolog OS=Arabidopsis thaliana GN=VPS11 PE=1 SV=1
trembl
ID A0A067KCE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18484 PE=4 SV=1
Gene Ontology
ID GO:0009705
description vacuolar protein-sorting-associated protein 11 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34021: 120051-124615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003216_110 0.0 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
2 Hb_000230_370 0.0795461276 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
3 Hb_001408_090 0.0812962681 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
4 Hb_002025_140 0.0816487897 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
5 Hb_001969_040 0.0854704126 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
6 Hb_005028_010 0.087785693 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
7 Hb_002986_050 0.0897286603 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
8 Hb_001268_210 0.0899281375 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000165_130 0.0902502737 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
10 Hb_000573_040 0.0913393036 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
11 Hb_000318_140 0.0928181465 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
12 Hb_001226_180 0.0928652867 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
13 Hb_018663_020 0.0963672818 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
14 Hb_000134_360 0.0971279432 - - PREDICTED: protein gar2 [Jatropha curcas]
15 Hb_002739_080 0.0979724887 - - cystathionine beta-lyase, putative [Ricinus communis]
16 Hb_000372_040 0.0985952074 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_000640_210 0.0987438388 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
18 Hb_004128_080 0.1010712268 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
19 Hb_001498_030 0.1042697954 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
20 Hb_000291_120 0.1051125221 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]

Gene co-expression network

sample Hb_003216_110 Hb_003216_110 Hb_000230_370 Hb_000230_370 Hb_003216_110--Hb_000230_370 Hb_001408_090 Hb_001408_090 Hb_003216_110--Hb_001408_090 Hb_002025_140 Hb_002025_140 Hb_003216_110--Hb_002025_140 Hb_001969_040 Hb_001969_040 Hb_003216_110--Hb_001969_040 Hb_005028_010 Hb_005028_010 Hb_003216_110--Hb_005028_010 Hb_002986_050 Hb_002986_050 Hb_003216_110--Hb_002986_050 Hb_046615_020 Hb_046615_020 Hb_000230_370--Hb_046615_020 Hb_000327_310 Hb_000327_310 Hb_000230_370--Hb_000327_310 Hb_001301_210 Hb_001301_210 Hb_000230_370--Hb_001301_210 Hb_002883_010 Hb_002883_010 Hb_000230_370--Hb_002883_010 Hb_001975_020 Hb_001975_020 Hb_000230_370--Hb_001975_020 Hb_000318_140 Hb_000318_140 Hb_000230_370--Hb_000318_140 Hb_000025_750 Hb_000025_750 Hb_001408_090--Hb_000025_750 Hb_001227_110 Hb_001227_110 Hb_001408_090--Hb_001227_110 Hb_001408_090--Hb_002025_140 Hb_000331_480 Hb_000331_480 Hb_001408_090--Hb_000331_480 Hb_001498_030 Hb_001498_030 Hb_001408_090--Hb_001498_030 Hb_000573_040 Hb_000573_040 Hb_002025_140--Hb_000573_040 Hb_004531_090 Hb_004531_090 Hb_002025_140--Hb_004531_090 Hb_000165_130 Hb_000165_130 Hb_002025_140--Hb_000165_130 Hb_000173_370 Hb_000173_370 Hb_002025_140--Hb_000173_370 Hb_004032_350 Hb_004032_350 Hb_002025_140--Hb_004032_350 Hb_000462_150 Hb_000462_150 Hb_001969_040--Hb_000462_150 Hb_000186_280 Hb_000186_280 Hb_001969_040--Hb_000186_280 Hb_003384_030 Hb_003384_030 Hb_001969_040--Hb_003384_030 Hb_018663_020 Hb_018663_020 Hb_001969_040--Hb_018663_020 Hb_004324_280 Hb_004324_280 Hb_001969_040--Hb_004324_280 Hb_002818_040 Hb_002818_040 Hb_001969_040--Hb_002818_040 Hb_012760_200 Hb_012760_200 Hb_005028_010--Hb_012760_200 Hb_000212_280 Hb_000212_280 Hb_005028_010--Hb_000212_280 Hb_000640_210 Hb_000640_210 Hb_005028_010--Hb_000640_210 Hb_005028_010--Hb_000573_040 Hb_025048_040 Hb_025048_040 Hb_005028_010--Hb_025048_040 Hb_001140_080 Hb_001140_080 Hb_005028_010--Hb_001140_080 Hb_002475_050 Hb_002475_050 Hb_002986_050--Hb_002475_050 Hb_002986_050--Hb_000212_280 Hb_000732_020 Hb_000732_020 Hb_002986_050--Hb_000732_020 Hb_000372_040 Hb_000372_040 Hb_002986_050--Hb_000372_040 Hb_005000_270 Hb_005000_270 Hb_002986_050--Hb_005000_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5071 8.19976 4.36144 3.8083 21.0797 27.5914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3102 3.67555 7.44227 3.72479 3.65724

CAGE analysis