Hb_003224_030

Information

Type -
Description -
Location Contig3224: 55801-63021
Sequence    

Annotation

kegg
ID pop:POPTR_0077s002402
description hypothetical protein
nr
ID XP_006388913.1
description hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
swissprot
ID F4KHH8
description Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1
trembl
ID U7E0A7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0077s002402g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34133: 55833-57652 , PASA_asmbl_34134: 57689-58310 , PASA_asmbl_34136: 59166-59487 , PASA_asmbl_34137: 59534-59995 , PASA_asmbl_34139: 61300-61704
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003224_030 0.0 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
2 Hb_007007_080 0.1043963458 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000084_240 0.105260447 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
4 Hb_002701_210 0.1238191895 - - Protein COBRA precursor, putative [Ricinus communis]
5 Hb_005499_010 0.1254915291 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
6 Hb_000186_200 0.1321204352 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
7 Hb_000069_730 0.1333314356 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
8 Hb_003077_050 0.144198754 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
9 Hb_002685_200 0.1514630217 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
10 Hb_001258_150 0.1548355169 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
11 Hb_000045_260 0.1550166783 - - protein with unknown function [Ricinus communis]
12 Hb_000069_330 0.1553876986 - - protein with unknown function [Ricinus communis]
13 Hb_000163_230 0.1589504845 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
14 Hb_091226_010 0.159315396 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
15 Hb_103865_010 0.1605494157 - - hypothetical protein 21 [Hevea brasiliensis]
16 Hb_000454_140 0.1621066437 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
17 Hb_011360_090 0.1629923026 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
18 Hb_000803_060 0.1630648111 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
19 Hb_000272_110 0.1637000024 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
20 Hb_003078_030 0.1641316087 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]

Gene co-expression network

sample Hb_003224_030 Hb_003224_030 Hb_007007_080 Hb_007007_080 Hb_003224_030--Hb_007007_080 Hb_000084_240 Hb_000084_240 Hb_003224_030--Hb_000084_240 Hb_002701_210 Hb_002701_210 Hb_003224_030--Hb_002701_210 Hb_005499_010 Hb_005499_010 Hb_003224_030--Hb_005499_010 Hb_000186_200 Hb_000186_200 Hb_003224_030--Hb_000186_200 Hb_000069_730 Hb_000069_730 Hb_003224_030--Hb_000069_730 Hb_000069_330 Hb_000069_330 Hb_007007_080--Hb_000069_330 Hb_003752_120 Hb_003752_120 Hb_007007_080--Hb_003752_120 Hb_002477_120 Hb_002477_120 Hb_007007_080--Hb_002477_120 Hb_005496_160 Hb_005496_160 Hb_007007_080--Hb_005496_160 Hb_002154_020 Hb_002154_020 Hb_007007_080--Hb_002154_020 Hb_000084_240--Hb_005499_010 Hb_000084_240--Hb_000186_200 Hb_002897_050 Hb_002897_050 Hb_000084_240--Hb_002897_050 Hb_000045_260 Hb_000045_260 Hb_000084_240--Hb_000045_260 Hb_002107_060 Hb_002107_060 Hb_000084_240--Hb_002107_060 Hb_011631_010 Hb_011631_010 Hb_000084_240--Hb_011631_010 Hb_002701_210--Hb_000186_200 Hb_003078_030 Hb_003078_030 Hb_002701_210--Hb_003078_030 Hb_002701_210--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_002701_210--Hb_000163_230 Hb_002701_210--Hb_000045_260 Hb_004108_240 Hb_004108_240 Hb_002701_210--Hb_004108_240 Hb_005499_010--Hb_011631_010 Hb_091226_010 Hb_091226_010 Hb_005499_010--Hb_091226_010 Hb_000454_140 Hb_000454_140 Hb_005499_010--Hb_000454_140 Hb_005499_010--Hb_000045_260 Hb_005499_010--Hb_002897_050 Hb_000186_200--Hb_003078_030 Hb_001009_090 Hb_001009_090 Hb_000186_200--Hb_001009_090 Hb_000186_200--Hb_000045_260 Hb_000186_200--Hb_000163_230 Hb_000069_730--Hb_000084_240 Hb_000071_140 Hb_000071_140 Hb_000069_730--Hb_000071_140 Hb_001258_150 Hb_001258_150 Hb_000069_730--Hb_001258_150 Hb_002534_050 Hb_002534_050 Hb_000069_730--Hb_002534_050 Hb_000069_730--Hb_005499_010 Hb_090782_010 Hb_090782_010 Hb_000069_730--Hb_090782_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.82904 40.4488 16.5845 9.15801 2.31898 3.4447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.56444 3.18132 6.89167 5.20313 2.19969

CAGE analysis