Hb_003225_020

Information

Type transcription factor
Description TF Family: HB
Location Contig3225: 61649-69295
Sequence    

Annotation

kegg
ID rcu:RCOM_0174220
description Homeobox protein HAT3.1, putative
nr
ID XP_012093068.1
description PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
swissprot
ID Q04996
description Homeobox protein HAT3.1 OS=Arabidopsis thaliana GN=HAT3.1 PE=2 SV=3
trembl
ID A0A067L7L0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16279 PE=4 SV=1
Gene Ontology
ID GO:0003677
description homeobox isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34140: 40230-61421 , PASA_asmbl_34141: 61780-62316 , PASA_asmbl_34143: 64559-65704 , PASA_asmbl_34144: 65835-66869 , PASA_asmbl_34145: 68722-69218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003225_020 0.0 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
2 Hb_000640_160 0.0517665656 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
3 Hb_007821_020 0.0677933503 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
4 Hb_031284_010 0.0717718461 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
5 Hb_001619_050 0.072844718 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
6 Hb_007283_010 0.0739752289 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
7 Hb_005731_110 0.0753481733 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
8 Hb_000115_280 0.0771117319 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
9 Hb_000457_230 0.0783673153 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
10 Hb_032202_080 0.079566057 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
11 Hb_004096_240 0.0811770896 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
12 Hb_138435_010 0.0815049483 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
13 Hb_000120_210 0.0832559531 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
14 Hb_000254_100 0.0834314809 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
15 Hb_008059_010 0.0836831618 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
16 Hb_005288_070 0.0862061067 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
17 Hb_000663_020 0.08728206 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
18 Hb_000224_150 0.0884715175 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial [Jatropha curcas]
19 Hb_030414_040 0.0888007276 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
20 Hb_005523_020 0.0894155333 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003225_020 Hb_003225_020 Hb_000640_160 Hb_000640_160 Hb_003225_020--Hb_000640_160 Hb_007821_020 Hb_007821_020 Hb_003225_020--Hb_007821_020 Hb_031284_010 Hb_031284_010 Hb_003225_020--Hb_031284_010 Hb_001619_050 Hb_001619_050 Hb_003225_020--Hb_001619_050 Hb_007283_010 Hb_007283_010 Hb_003225_020--Hb_007283_010 Hb_005731_110 Hb_005731_110 Hb_003225_020--Hb_005731_110 Hb_000640_160--Hb_005731_110 Hb_000640_160--Hb_001619_050 Hb_032202_080 Hb_032202_080 Hb_000640_160--Hb_032202_080 Hb_004096_240 Hb_004096_240 Hb_000640_160--Hb_004096_240 Hb_138435_010 Hb_138435_010 Hb_000640_160--Hb_138435_010 Hb_000567_070 Hb_000567_070 Hb_007821_020--Hb_000567_070 Hb_000254_100 Hb_000254_100 Hb_007821_020--Hb_000254_100 Hb_000115_280 Hb_000115_280 Hb_007821_020--Hb_000115_280 Hb_007821_020--Hb_031284_010 Hb_003186_020 Hb_003186_020 Hb_007821_020--Hb_003186_020 Hb_008059_010 Hb_008059_010 Hb_031284_010--Hb_008059_010 Hb_031284_010--Hb_000115_280 Hb_031284_010--Hb_003186_020 Hb_031284_010--Hb_138435_010 Hb_000120_210 Hb_000120_210 Hb_031284_010--Hb_000120_210 Hb_000457_230 Hb_000457_230 Hb_031284_010--Hb_000457_230 Hb_000445_140 Hb_000445_140 Hb_001619_050--Hb_000445_140 Hb_001014_100 Hb_001014_100 Hb_001619_050--Hb_001014_100 Hb_017151_010 Hb_017151_010 Hb_001619_050--Hb_017151_010 Hb_002870_020 Hb_002870_020 Hb_001619_050--Hb_002870_020 Hb_005288_070 Hb_005288_070 Hb_007283_010--Hb_005288_070 Hb_007283_010--Hb_000457_230 Hb_030414_040 Hb_030414_040 Hb_007283_010--Hb_030414_040 Hb_004324_330 Hb_004324_330 Hb_007283_010--Hb_004324_330 Hb_007283_010--Hb_031284_010 Hb_000205_260 Hb_000205_260 Hb_007283_010--Hb_000205_260 Hb_000663_020 Hb_000663_020 Hb_005731_110--Hb_000663_020 Hb_000959_220 Hb_000959_220 Hb_005731_110--Hb_000959_220 Hb_005162_110 Hb_005162_110 Hb_005731_110--Hb_005162_110 Hb_065755_030 Hb_065755_030 Hb_005731_110--Hb_065755_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.59061 5.07299 9.73799 3.75026 4.83173 5.06754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.55584 3.78246 3.10699 2.73664 7.31721

CAGE analysis