Hb_003226_100

Information

Type -
Description -
Location Contig3226: 65396-67978
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20400g
description POPTRDRAFT_552462; 60S ribosomal protein L18
nr
ID XP_012082803.1
description PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
swissprot
ID P42791
description 60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2
trembl
ID A0A067JZH0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13954 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l18-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34161: 65406-67941
cDNA
(Sanger)
(ID:Location)		 014_J22.ab1: 65788-67897 , 033_L21.ab1: 65604-67897 , 040_O16.ab1: 65575-67932

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_100 0.0 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
2 Hb_000920_110 0.0511282438 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
3 Hb_004157_030 0.0569204035 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
4 Hb_003018_020 0.0596728919 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
5 Hb_002056_050 0.0599899925 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
6 Hb_001616_040 0.0629969244 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
7 Hb_143496_010 0.0633747733 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
8 Hb_001141_140 0.0634085044 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
9 Hb_003018_010 0.0636202236 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
10 Hb_000025_620 0.063695943 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
11 Hb_000506_070 0.0649509489 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
12 Hb_002798_020 0.0651706062 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
13 Hb_010175_040 0.0655139808 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
14 Hb_000996_140 0.0679398268 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
15 Hb_003683_110 0.0688372033 - - JHL10I11.3 [Jatropha curcas]
16 Hb_001780_040 0.0717535495 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
17 Hb_001863_430 0.0744168641 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
18 Hb_000836_470 0.0753272032 - - -
19 Hb_001476_080 0.0766215417 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
20 Hb_001484_070 0.0775187764 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003226_100 Hb_003226_100 Hb_000920_110 Hb_000920_110 Hb_003226_100--Hb_000920_110 Hb_004157_030 Hb_004157_030 Hb_003226_100--Hb_004157_030 Hb_003018_020 Hb_003018_020 Hb_003226_100--Hb_003018_020 Hb_002056_050 Hb_002056_050 Hb_003226_100--Hb_002056_050 Hb_001616_040 Hb_001616_040 Hb_003226_100--Hb_001616_040 Hb_143496_010 Hb_143496_010 Hb_003226_100--Hb_143496_010 Hb_000920_110--Hb_002056_050 Hb_001484_070 Hb_001484_070 Hb_000920_110--Hb_001484_070 Hb_010175_040 Hb_010175_040 Hb_000920_110--Hb_010175_040 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_000920_110--Hb_001616_040 Hb_004157_030--Hb_003018_020 Hb_001814_050 Hb_001814_050 Hb_004157_030--Hb_001814_050 Hb_000134_070 Hb_000134_070 Hb_004157_030--Hb_000134_070 Hb_000506_070 Hb_000506_070 Hb_004157_030--Hb_000506_070 Hb_174865_010 Hb_174865_010 Hb_004157_030--Hb_174865_010 Hb_003018_020--Hb_174865_010 Hb_003018_020--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_003018_020--Hb_001141_140 Hb_000836_470 Hb_000836_470 Hb_003018_020--Hb_000836_470 Hb_010068_020 Hb_010068_020 Hb_002056_050--Hb_010068_020 Hb_003540_240 Hb_003540_240 Hb_002056_050--Hb_003540_240 Hb_000172_320 Hb_000172_320 Hb_002056_050--Hb_000172_320 Hb_002056_050--Hb_001484_070 Hb_006541_010 Hb_006541_010 Hb_001616_040--Hb_006541_010 Hb_001016_030 Hb_001016_030 Hb_001616_040--Hb_001016_030 Hb_000030_290 Hb_000030_290 Hb_001616_040--Hb_000030_290 Hb_001616_040--Hb_010175_040 Hb_143496_010--Hb_010175_040 Hb_017491_060 Hb_017491_060 Hb_143496_010--Hb_017491_060 Hb_143496_010--Hb_001141_140 Hb_143496_010--Hb_003018_020 Hb_000699_160 Hb_000699_160 Hb_143496_010--Hb_000699_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.7801 40.0285 80.0993 76.8451 77.0912 78.6172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
160.127 272.336 90.1217 75.0233 56.3665

CAGE analysis