Hb_003226_110

Information

Type -
Description -
Location Contig3226: 68640-71066
Sequence    

Annotation

kegg
ID rcu:RCOM_1178690
description sec15, putative
nr
ID XP_012082801.1
description PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
swissprot
ID F4JHH5
description Exocyst complex component SEC15B OS=Arabidopsis thaliana GN=SEC15B PE=1 SV=1
trembl
ID A0A067JWB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13953 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component sec15b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_110 0.0 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
2 Hb_004195_120 0.0846744445 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
3 Hb_005649_090 0.094822668 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
4 Hb_004310_040 0.1106524454 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000866_080 0.1140961626 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
6 Hb_001484_100 0.1211924165 - - PREDICTED: cyanate hydratase [Jatropha curcas]
7 Hb_002477_120 0.1221111659 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
8 Hb_000802_190 0.1233454437 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
9 Hb_001277_040 0.1249508037 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
10 Hb_130389_010 0.1281296276 - - PREDICTED: la protein 1 [Jatropha curcas]
11 Hb_000454_140 0.1313266368 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
12 Hb_002016_060 0.131714186 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
13 Hb_000836_370 0.1318405006 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
14 Hb_001369_770 0.1318673322 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
15 Hb_001231_080 0.1319064253 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
16 Hb_125126_010 0.1324343706 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
17 Hb_002942_110 0.1337261538 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
18 Hb_020178_050 0.133731074 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
19 Hb_011249_060 0.1343850998 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
20 Hb_003078_030 0.1350329136 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]

Gene co-expression network

sample Hb_003226_110 Hb_003226_110 Hb_004195_120 Hb_004195_120 Hb_003226_110--Hb_004195_120 Hb_005649_090 Hb_005649_090 Hb_003226_110--Hb_005649_090 Hb_004310_040 Hb_004310_040 Hb_003226_110--Hb_004310_040 Hb_000866_080 Hb_000866_080 Hb_003226_110--Hb_000866_080 Hb_001484_100 Hb_001484_100 Hb_003226_110--Hb_001484_100 Hb_002477_120 Hb_002477_120 Hb_003226_110--Hb_002477_120 Hb_002942_110 Hb_002942_110 Hb_004195_120--Hb_002942_110 Hb_000227_310 Hb_000227_310 Hb_004195_120--Hb_000227_310 Hb_004195_120--Hb_005649_090 Hb_004195_120--Hb_004310_040 Hb_004319_070 Hb_004319_070 Hb_004195_120--Hb_004319_070 Hb_000056_300 Hb_000056_300 Hb_005649_090--Hb_000056_300 Hb_001009_090 Hb_001009_090 Hb_005649_090--Hb_001009_090 Hb_002903_140 Hb_002903_140 Hb_005649_090--Hb_002903_140 Hb_030545_030 Hb_030545_030 Hb_005649_090--Hb_030545_030 Hb_002016_060 Hb_002016_060 Hb_004310_040--Hb_002016_060 Hb_004310_040--Hb_000866_080 Hb_010661_020 Hb_010661_020 Hb_004310_040--Hb_010661_020 Hb_011249_060 Hb_011249_060 Hb_004310_040--Hb_011249_060 Hb_015183_100 Hb_015183_100 Hb_004310_040--Hb_015183_100 Hb_003895_020 Hb_003895_020 Hb_000866_080--Hb_003895_020 Hb_000866_080--Hb_011249_060 Hb_000866_080--Hb_015183_100 Hb_000300_250 Hb_000300_250 Hb_000866_080--Hb_000300_250 Hb_000917_100 Hb_000917_100 Hb_000866_080--Hb_000917_100 Hb_005054_310 Hb_005054_310 Hb_001484_100--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_001484_100--Hb_000836_370 Hb_085364_010 Hb_085364_010 Hb_001484_100--Hb_085364_010 Hb_003078_030 Hb_003078_030 Hb_001484_100--Hb_003078_030 Hb_001484_100--Hb_005649_090 Hb_001484_100--Hb_030545_030 Hb_008667_060 Hb_008667_060 Hb_002477_120--Hb_008667_060 Hb_002154_020 Hb_002154_020 Hb_002477_120--Hb_002154_020 Hb_000802_190 Hb_000802_190 Hb_002477_120--Hb_000802_190 Hb_007007_080 Hb_007007_080 Hb_002477_120--Hb_007007_080 Hb_004032_310 Hb_004032_310 Hb_002477_120--Hb_004032_310 Hb_002471_140 Hb_002471_140 Hb_002477_120--Hb_002471_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.35532 11.3916 5.46697 3.26967 1.70555 2.30396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51449 0.933274 0.46503 3.79242 2.01292

CAGE analysis