Hb_003226_150

Information

Type -
Description -
Location Contig3226: 86868-89026
Sequence    

Annotation

kegg
ID rcu:RCOM_1178630
description hypothetical protein
nr
ID XP_012082794.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]
swissprot
ID Q9LFA5
description Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana GN=MED28 PE=1 SV=1
trembl
ID B9SAT0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1178630 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34169: 86903-88954 , PASA_asmbl_34170: 86903-88607
cDNA
(Sanger)
(ID:Location)		 021_H14.ab1: 87130-88954

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_150 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]
2 Hb_000521_150 0.0895041081 - - PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas]
3 Hb_000282_060 0.0934564928 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
4 Hb_000926_290 0.0939447994 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006569_020 0.0955520778 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
6 Hb_002529_100 0.0991034515 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
7 Hb_008695_190 0.1011860089 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
8 Hb_001437_040 0.1049769355 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
9 Hb_022250_040 0.1076390559 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
10 Hb_000412_110 0.108672419 - - Rop4 [Hevea brasiliensis]
11 Hb_003777_180 0.1090930967 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
12 Hb_003086_020 0.1091938481 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
13 Hb_001671_080 0.109290072 - - amino acid binding protein, putative [Ricinus communis]
14 Hb_000676_220 0.1098950253 - - ADP-ribosylation factor, putative [Ricinus communis]
15 Hb_000371_080 0.1119605519 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
16 Hb_002326_030 0.1124237918 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
17 Hb_002235_400 0.113984905 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
18 Hb_157854_010 0.1147125511 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
19 Hb_004204_030 0.1147984835 - - unknown [Populus trichocarpa]
20 Hb_024835_030 0.1148273401 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]

Gene co-expression network

sample Hb_003226_150 Hb_003226_150 Hb_000521_150 Hb_000521_150 Hb_003226_150--Hb_000521_150 Hb_000282_060 Hb_000282_060 Hb_003226_150--Hb_000282_060 Hb_000926_290 Hb_000926_290 Hb_003226_150--Hb_000926_290 Hb_006569_020 Hb_006569_020 Hb_003226_150--Hb_006569_020 Hb_002529_100 Hb_002529_100 Hb_003226_150--Hb_002529_100 Hb_008695_190 Hb_008695_190 Hb_003226_150--Hb_008695_190 Hb_000521_150--Hb_002529_100 Hb_000521_150--Hb_000926_290 Hb_003581_090 Hb_003581_090 Hb_000521_150--Hb_003581_090 Hb_092706_020 Hb_092706_020 Hb_000521_150--Hb_092706_020 Hb_000045_190 Hb_000045_190 Hb_000521_150--Hb_000045_190 Hb_000732_260 Hb_000732_260 Hb_000282_060--Hb_000732_260 Hb_033491_010 Hb_033491_010 Hb_000282_060--Hb_033491_010 Hb_000282_060--Hb_006569_020 Hb_118977_020 Hb_118977_020 Hb_000282_060--Hb_118977_020 Hb_000784_090 Hb_000784_090 Hb_000282_060--Hb_000784_090 Hb_001493_100 Hb_001493_100 Hb_000282_060--Hb_001493_100 Hb_000926_290--Hb_002529_100 Hb_000926_290--Hb_003581_090 Hb_000008_320 Hb_000008_320 Hb_000926_290--Hb_000008_320 Hb_000926_290--Hb_008695_190 Hb_000316_110 Hb_000316_110 Hb_006569_020--Hb_000316_110 Hb_022250_040 Hb_022250_040 Hb_006569_020--Hb_022250_040 Hb_001776_110 Hb_001776_110 Hb_006569_020--Hb_001776_110 Hb_001437_040 Hb_001437_040 Hb_006569_020--Hb_001437_040 Hb_159558_030 Hb_159558_030 Hb_006569_020--Hb_159558_030 Hb_004662_030 Hb_004662_030 Hb_006569_020--Hb_004662_030 Hb_001257_080 Hb_001257_080 Hb_002529_100--Hb_001257_080 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_002529_100--Hb_000798_030 Hb_000023_230 Hb_000023_230 Hb_002529_100--Hb_000023_230 Hb_002529_100--Hb_000045_190 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340 Hb_000072_280 Hb_000072_280 Hb_008695_190--Hb_000072_280 Hb_025087_010 Hb_025087_010 Hb_008695_190--Hb_025087_010 Hb_001981_090 Hb_001981_090 Hb_008695_190--Hb_001981_090 Hb_001366_230 Hb_001366_230 Hb_008695_190--Hb_001366_230 Hb_000809_040 Hb_000809_040 Hb_008695_190--Hb_000809_040 Hb_004882_020 Hb_004882_020 Hb_008695_190--Hb_004882_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
162.905 20.0032 19.312 13.7001 68.8691 116.045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
174.311 128.143 97.5198 36.7546 10.8053

CAGE analysis