Hb_003226_160

Information

Type -
Description -
Location Contig3226: 91063-99660
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12280g
description hypothetical protein
nr
ID XP_011042104.1
description PREDICTED: poly [ADP-ribose] polymerase 2-like isoform X2 [Populus euphratica]
swissprot
ID Q9Y6F1
description Poly [ADP-ribose] polymerase 3 OS=Homo sapiens GN=PARP3 PE=1 SV=3
trembl
ID A9PAR1
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0003950
description poly

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_160 0.0 - - PREDICTED: poly [ADP-ribose] polymerase 2-like isoform X2 [Populus euphratica]
2 Hb_005333_150 0.1405034182 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
3 Hb_002896_080 0.1955456902 - - -
4 Hb_000243_140 0.1983253142 transcription factor TF Family: SRS Lateral root primordium protein-related, putative [Theobroma cacao]
5 Hb_001863_090 0.2062784192 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
6 Hb_000907_170 0.2099260401 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
7 Hb_002798_010 0.2103078304 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
8 Hb_007451_020 0.2103555851 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
9 Hb_002701_240 0.2110966192 - - PREDICTED: putative DNA helicase INO80 [Jatropha curcas]
10 Hb_001832_120 0.2122417164 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
11 Hb_003750_030 0.2148671674 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
12 Hb_003097_210 0.2174840244 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
13 Hb_002027_140 0.2182306222 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
14 Hb_001688_020 0.2204952902 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
15 Hb_145084_010 0.2215784775 - - PREDICTED: uncharacterized protein LOC105646270 [Jatropha curcas]
16 Hb_000139_420 0.2217984853 - - Stem-specific protein TSJT1, putative [Ricinus communis]
17 Hb_005501_050 0.2240477625 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_006816_200 0.2249493163 - - conserved hypothetical protein [Ricinus communis]
19 Hb_032260_030 0.2265572509 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
20 Hb_026048_070 0.22692513 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]

Gene co-expression network

sample Hb_003226_160 Hb_003226_160 Hb_005333_150 Hb_005333_150 Hb_003226_160--Hb_005333_150 Hb_002896_080 Hb_002896_080 Hb_003226_160--Hb_002896_080 Hb_000243_140 Hb_000243_140 Hb_003226_160--Hb_000243_140 Hb_001863_090 Hb_001863_090 Hb_003226_160--Hb_001863_090 Hb_000907_170 Hb_000907_170 Hb_003226_160--Hb_000907_170 Hb_002798_010 Hb_002798_010 Hb_003226_160--Hb_002798_010 Hb_005333_150--Hb_000243_140 Hb_007451_020 Hb_007451_020 Hb_005333_150--Hb_007451_020 Hb_005333_150--Hb_002798_010 Hb_006922_060 Hb_006922_060 Hb_005333_150--Hb_006922_060 Hb_001117_070 Hb_001117_070 Hb_005333_150--Hb_001117_070 Hb_154826_010 Hb_154826_010 Hb_002896_080--Hb_154826_010 Hb_001019_040 Hb_001019_040 Hb_002896_080--Hb_001019_040 Hb_005625_060 Hb_005625_060 Hb_002896_080--Hb_005625_060 Hb_000580_080 Hb_000580_080 Hb_002896_080--Hb_000580_080 Hb_005701_020 Hb_005701_020 Hb_002896_080--Hb_005701_020 Hb_004800_070 Hb_004800_070 Hb_002896_080--Hb_004800_070 Hb_009510_040 Hb_009510_040 Hb_000243_140--Hb_009510_040 Hb_000243_140--Hb_001117_070 Hb_000640_300 Hb_000640_300 Hb_000243_140--Hb_000640_300 Hb_001619_080 Hb_001619_080 Hb_000243_140--Hb_001619_080 Hb_003052_220 Hb_003052_220 Hb_000243_140--Hb_003052_220 Hb_002925_030 Hb_002925_030 Hb_001863_090--Hb_002925_030 Hb_011311_010 Hb_011311_010 Hb_001863_090--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_001863_090--Hb_002660_030 Hb_001016_090 Hb_001016_090 Hb_001863_090--Hb_001016_090 Hb_003398_120 Hb_003398_120 Hb_001863_090--Hb_003398_120 Hb_032260_030 Hb_032260_030 Hb_001863_090--Hb_032260_030 Hb_002609_060 Hb_002609_060 Hb_000907_170--Hb_002609_060 Hb_145084_010 Hb_145084_010 Hb_000907_170--Hb_145084_010 Hb_000742_110 Hb_000742_110 Hb_000907_170--Hb_000742_110 Hb_002138_010 Hb_002138_010 Hb_000907_170--Hb_002138_010 Hb_010560_040 Hb_010560_040 Hb_000907_170--Hb_010560_040 Hb_003097_210 Hb_003097_210 Hb_000907_170--Hb_003097_210 Hb_002798_010--Hb_006922_060 Hb_094437_060 Hb_094437_060 Hb_002798_010--Hb_094437_060 Hb_003750_030 Hb_003750_030 Hb_002798_010--Hb_003750_030 Hb_002236_050 Hb_002236_050 Hb_002798_010--Hb_002236_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.86789 2.75862 0.650001 0.764991 2.09886 4.52291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.30901 17.7481 5.10604 16.2742 2.77443

CAGE analysis