Hb_003226_170

Information

Type -
Description -
Location Contig3226: 98953-108017
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12290g
description Poly [ADP-ribose] polymerase family protein
nr
ID XP_012082789.1
description PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
swissprot
ID Q5Z8Q9
description Poly [ADP-ribose] polymerase 2-A OS=Oryza sativa subsp. japonica GN=PARP2-A PE=3 SV=2
trembl
ID U5FQE9
description Poly [ADP-ribose] polymerase family protein OS=Populus trichocarpa GN=POPTR_0014s12290g PE=4 SV=1
Gene Ontology
ID GO:0003950
description poly

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34171: 101120-102080 , PASA_asmbl_34172: 105867-106902 , PASA_asmbl_34173: 107324-107951
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_170 0.0 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
2 Hb_061256_030 0.0828151962 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
3 Hb_003673_020 0.0992994874 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
4 Hb_002837_070 0.1024485655 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
5 Hb_001846_080 0.1134014608 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
6 Hb_174865_050 0.1136653514 - - PREDICTED: neuroguidin [Jatropha curcas]
7 Hb_005016_150 0.1217381456 - - -
8 Hb_000441_230 0.1217674224 - - unnamed protein product [Coffea canephora]
9 Hb_007111_040 0.1219206366 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
10 Hb_003540_140 0.123376225 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
11 Hb_035360_010 0.1242726855 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
12 Hb_005271_030 0.1248574049 - - copper-transporting atpase p-type, putative [Ricinus communis]
13 Hb_000213_060 0.1253259918 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
14 Hb_000185_090 0.1261316789 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
15 Hb_012807_120 0.1272399808 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_002769_040 0.1321790749 - - farnesyl-diphosphate farnesyltransferase, putative [Ricinus communis]
17 Hb_010189_010 0.1322003314 - - -
18 Hb_006478_070 0.1333161957 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
19 Hb_113216_010 0.1343597349 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
20 Hb_000211_090 0.1373734805 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]

Gene co-expression network

sample Hb_003226_170 Hb_003226_170 Hb_061256_030 Hb_061256_030 Hb_003226_170--Hb_061256_030 Hb_003673_020 Hb_003673_020 Hb_003226_170--Hb_003673_020 Hb_002837_070 Hb_002837_070 Hb_003226_170--Hb_002837_070 Hb_001846_080 Hb_001846_080 Hb_003226_170--Hb_001846_080 Hb_174865_050 Hb_174865_050 Hb_003226_170--Hb_174865_050 Hb_005016_150 Hb_005016_150 Hb_003226_170--Hb_005016_150 Hb_061256_030--Hb_002837_070 Hb_061256_030--Hb_003673_020 Hb_061256_030--Hb_174865_050 Hb_010189_010 Hb_010189_010 Hb_061256_030--Hb_010189_010 Hb_009421_100 Hb_009421_100 Hb_061256_030--Hb_009421_100 Hb_035360_010 Hb_035360_010 Hb_003673_020--Hb_035360_010 Hb_000779_040 Hb_000779_040 Hb_003673_020--Hb_000779_040 Hb_000211_090 Hb_000211_090 Hb_003673_020--Hb_000211_090 Hb_000211_080 Hb_000211_080 Hb_003673_020--Hb_000211_080 Hb_000619_070 Hb_000619_070 Hb_003673_020--Hb_000619_070 Hb_003666_050 Hb_003666_050 Hb_003673_020--Hb_003666_050 Hb_113216_010 Hb_113216_010 Hb_002837_070--Hb_113216_010 Hb_002837_070--Hb_010189_010 Hb_002837_070--Hb_174865_050 Hb_000212_280 Hb_000212_280 Hb_002837_070--Hb_000212_280 Hb_002837_070--Hb_000211_090 Hb_000172_530 Hb_000172_530 Hb_001846_080--Hb_000172_530 Hb_000483_370 Hb_000483_370 Hb_001846_080--Hb_000483_370 Hb_002172_030 Hb_002172_030 Hb_001846_080--Hb_002172_030 Hb_006478_070 Hb_006478_070 Hb_001846_080--Hb_006478_070 Hb_012654_020 Hb_012654_020 Hb_001846_080--Hb_012654_020 Hb_000320_440 Hb_000320_440 Hb_001846_080--Hb_000320_440 Hb_174865_050--Hb_000212_280 Hb_000573_040 Hb_000573_040 Hb_174865_050--Hb_000573_040 Hb_174865_050--Hb_113216_010 Hb_174865_050--Hb_003666_050 Hb_001195_030 Hb_001195_030 Hb_174865_050--Hb_001195_030 Hb_000185_090 Hb_000185_090 Hb_174865_050--Hb_000185_090 Hb_001675_060 Hb_001675_060 Hb_005016_150--Hb_001675_060 Hb_000213_060 Hb_000213_060 Hb_005016_150--Hb_000213_060 Hb_001477_010 Hb_001477_010 Hb_005016_150--Hb_001477_010 Hb_181320_010 Hb_181320_010 Hb_005016_150--Hb_181320_010 Hb_000256_270 Hb_000256_270 Hb_005016_150--Hb_000256_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.381 1.27584 2.36978 1.30967 23.8994 28.5829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.8125 3.13792 3.09914 1.7081 0.709566

CAGE analysis