Hb_003226_200

Information

Type -
Description -
Location Contig3226: 149578-154399
Sequence    

Annotation

kegg
ID rcu:RCOM_1178350
description magnesium/proton exchanger, putative
nr
ID XP_002523091.1
description magnesium/proton exchanger, putative [Ricinus communis]
swissprot
ID O22252
description Magnesium/proton exchanger OS=Arabidopsis thaliana GN=MHX PE=2 SV=3
trembl
ID B9SAS2
description Magnesium/proton exchanger, putative OS=Ricinus communis GN=RCOM_1178350 PE=4 SV=1
Gene Ontology
ID GO:0016021
description magnesium proton exchanger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34180: 149576-151222 , PASA_asmbl_34181: 151231-153944 , PASA_asmbl_34182: 153985-154166 , PASA_asmbl_34183: 154189-154831 , PASA_asmbl_34184: 154234-154434 , PASA_asmbl_34185: 154457-154551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_200 0.0 - - magnesium/proton exchanger, putative [Ricinus communis]
2 Hb_033152_110 0.0970537434 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
3 Hb_000622_060 0.1030123155 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
4 Hb_000115_360 0.1066349367 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
5 Hb_000979_260 0.1071169875 - - ARF GTPase activator, putative [Ricinus communis]
6 Hb_002759_220 0.1077518728 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
7 Hb_000008_060 0.1092487957 - - protein binding protein, putative [Ricinus communis]
8 Hb_161396_010 0.1167565793 - - hypothetical protein F383_26394 [Gossypium arboreum]
9 Hb_000130_200 0.1209509289 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
10 Hb_000054_030 0.1226484628 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
11 Hb_003778_020 0.1279392787 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_002486_020 0.1319063186 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000193_340 0.1331801607 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
14 Hb_001754_120 0.1387287324 - - PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
15 Hb_001269_070 0.1442761035 - - double-stranded RNA binding protein, putative [Ricinus communis]
16 Hb_002391_320 0.145127838 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
17 Hb_007101_260 0.1499665329 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
18 Hb_008179_010 0.1505865489 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
19 Hb_002397_050 0.1518070869 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
20 Hb_000032_600 0.1533540708 - - PREDICTED: B2 protein [Jatropha curcas]

Gene co-expression network

sample Hb_003226_200 Hb_003226_200 Hb_033152_110 Hb_033152_110 Hb_003226_200--Hb_033152_110 Hb_000622_060 Hb_000622_060 Hb_003226_200--Hb_000622_060 Hb_000115_360 Hb_000115_360 Hb_003226_200--Hb_000115_360 Hb_000979_260 Hb_000979_260 Hb_003226_200--Hb_000979_260 Hb_002759_220 Hb_002759_220 Hb_003226_200--Hb_002759_220 Hb_000008_060 Hb_000008_060 Hb_003226_200--Hb_000008_060 Hb_033152_110--Hb_000115_360 Hb_033152_110--Hb_000622_060 Hb_000130_200 Hb_000130_200 Hb_033152_110--Hb_000130_200 Hb_001754_120 Hb_001754_120 Hb_033152_110--Hb_001754_120 Hb_000046_480 Hb_000046_480 Hb_033152_110--Hb_000046_480 Hb_000622_060--Hb_000115_360 Hb_000622_060--Hb_000130_200 Hb_000032_600 Hb_000032_600 Hb_000622_060--Hb_000032_600 Hb_004129_010 Hb_004129_010 Hb_000622_060--Hb_004129_010 Hb_002391_320 Hb_002391_320 Hb_000115_360--Hb_002391_320 Hb_000115_360--Hb_004129_010 Hb_112064_010 Hb_112064_010 Hb_000115_360--Hb_112064_010 Hb_000979_260--Hb_001754_120 Hb_000979_260--Hb_033152_110 Hb_004724_170 Hb_004724_170 Hb_000979_260--Hb_004724_170 Hb_011242_010 Hb_011242_010 Hb_000979_260--Hb_011242_010 Hb_000979_260--Hb_000622_060 Hb_000193_340 Hb_000193_340 Hb_002759_220--Hb_000193_340 Hb_003226_250 Hb_003226_250 Hb_002759_220--Hb_003226_250 Hb_161396_010 Hb_161396_010 Hb_002759_220--Hb_161396_010 Hb_006153_160 Hb_006153_160 Hb_002759_220--Hb_006153_160 Hb_000805_010 Hb_000805_010 Hb_002759_220--Hb_000805_010 Hb_003778_020 Hb_003778_020 Hb_000008_060--Hb_003778_020 Hb_000008_060--Hb_000622_060 Hb_000008_060--Hb_000130_200 Hb_000008_060--Hb_000115_360 Hb_000849_120 Hb_000849_120 Hb_000008_060--Hb_000849_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150564 2.5078 6.10446 7.87216 0.0649234 0.15663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1684 1.87856 2.22914 3.23946 10.0606

CAGE analysis