Hb_003226_230

Information

Type -
Description -
Location Contig3226: 174186-175669
Sequence    

Annotation

kegg
ID pda:103699041
description transposon Ty3-G Gag-Pol polyprotein
nr
ID XP_008779305.1
description PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID F2E447
description Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_230 0.0 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
2 Hb_162676_010 0.0338066371 - - ATP binding protein, putative [Ricinus communis]
3 Hb_125961_010 0.0453146902 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000120_480 0.0486449189 - - -
5 Hb_005057_030 0.0839057823 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
6 Hb_005723_090 0.0861829085 - - conserved hypothetical protein [Ricinus communis]
7 Hb_066293_010 0.0877413985 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
8 Hb_008461_070 0.0986307972 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
9 Hb_001158_250 0.1015889744 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002713_060 0.1049700272 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
11 Hb_014700_030 0.105071245 - - tryptophan synthase beta chain, putative [Ricinus communis]
12 Hb_002631_110 0.1112105408 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
13 Hb_001305_020 0.1164185833 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
14 Hb_010222_060 0.1181641758 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000622_030 0.1207211532 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
16 Hb_005051_010 0.1214119037 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
17 Hb_002636_070 0.1230189811 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
18 Hb_005183_100 0.1240785465 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
19 Hb_009522_020 0.1240868826 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
20 Hb_173387_010 0.1243189359 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_003226_230 Hb_003226_230 Hb_162676_010 Hb_162676_010 Hb_003226_230--Hb_162676_010 Hb_125961_010 Hb_125961_010 Hb_003226_230--Hb_125961_010 Hb_000120_480 Hb_000120_480 Hb_003226_230--Hb_000120_480 Hb_005057_030 Hb_005057_030 Hb_003226_230--Hb_005057_030 Hb_005723_090 Hb_005723_090 Hb_003226_230--Hb_005723_090 Hb_066293_010 Hb_066293_010 Hb_003226_230--Hb_066293_010 Hb_162676_010--Hb_125961_010 Hb_162676_010--Hb_000120_480 Hb_162676_010--Hb_005057_030 Hb_014700_030 Hb_014700_030 Hb_162676_010--Hb_014700_030 Hb_008461_070 Hb_008461_070 Hb_162676_010--Hb_008461_070 Hb_125961_010--Hb_000120_480 Hb_125961_010--Hb_005057_030 Hb_125961_010--Hb_008461_070 Hb_125961_010--Hb_066293_010 Hb_000120_480--Hb_005723_090 Hb_001158_250 Hb_001158_250 Hb_000120_480--Hb_001158_250 Hb_000120_480--Hb_005057_030 Hb_005057_030--Hb_005723_090 Hb_005183_100 Hb_005183_100 Hb_005057_030--Hb_005183_100 Hb_002713_060 Hb_002713_060 Hb_005057_030--Hb_002713_060 Hb_005723_090--Hb_005183_100 Hb_000622_030 Hb_000622_030 Hb_005723_090--Hb_000622_030 Hb_005723_090--Hb_001158_250 Hb_001305_020 Hb_001305_020 Hb_005723_090--Hb_001305_020 Hb_169948_010 Hb_169948_010 Hb_066293_010--Hb_169948_010 Hb_066293_010--Hb_000120_480 Hb_066293_010--Hb_162676_010 Hb_057880_020 Hb_057880_020 Hb_066293_010--Hb_057880_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.121595 0.0774826 0.164072 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0358704 0.333687

CAGE analysis