Hb_003226_270

Information

Type -
Description -
Location Contig3226: 196742-197272
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12390g
description POPTRDRAFT_1099186; hypothetical protein
nr
ID XP_002321006.1
description hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
swissprot
ID P17407
description 21 kDa protein OS=Daucus carota PE=2 SV=1
trembl
ID B9I9R5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s12390g PE=4 SV=1
Gene Ontology
ID GO:0004857
description 21 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_270 0.0 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
2 Hb_130470_010 0.0004486681 - - hypothetical protein, partial [Pseudomonas tolaasii]
3 Hb_163434_010 0.0096585042 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
4 Hb_108331_010 0.0122175755 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
5 Hb_085438_010 0.0173151684 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
6 Hb_002431_070 0.0174074927 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
7 Hb_004730_030 0.017674042 - - synaptonemal complex protein, putative [Ricinus communis]
8 Hb_000676_210 0.020708668 - - Cytochrome P450 superfamily protein [Theobroma cacao]
9 Hb_003207_140 0.0210017037 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
10 Hb_004337_010 0.023886366 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_002223_010 0.0239011637 - - hypothetical protein VITISV_009489 [Vitis vinifera]
12 Hb_006995_030 0.0239170337 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
13 Hb_029793_020 0.0243133771 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_029154_020 0.0244364796 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_035484_010 0.1084664666 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
16 Hb_007108_060 0.118858792 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_001072_060 0.1441731313 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
18 Hb_007924_040 0.1493024845 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
19 Hb_003683_100 0.1501604776 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_000474_020 0.151791207 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_003226_270 Hb_003226_270 Hb_130470_010 Hb_130470_010 Hb_003226_270--Hb_130470_010 Hb_163434_010 Hb_163434_010 Hb_003226_270--Hb_163434_010 Hb_108331_010 Hb_108331_010 Hb_003226_270--Hb_108331_010 Hb_085438_010 Hb_085438_010 Hb_003226_270--Hb_085438_010 Hb_002431_070 Hb_002431_070 Hb_003226_270--Hb_002431_070 Hb_004730_030 Hb_004730_030 Hb_003226_270--Hb_004730_030 Hb_130470_010--Hb_163434_010 Hb_130470_010--Hb_108331_010 Hb_130470_010--Hb_085438_010 Hb_130470_010--Hb_002431_070 Hb_130470_010--Hb_004730_030 Hb_163434_010--Hb_108331_010 Hb_163434_010--Hb_085438_010 Hb_163434_010--Hb_002431_070 Hb_163434_010--Hb_004730_030 Hb_108331_010--Hb_085438_010 Hb_108331_010--Hb_002431_070 Hb_108331_010--Hb_004730_030 Hb_000676_210 Hb_000676_210 Hb_108331_010--Hb_000676_210 Hb_003207_140 Hb_003207_140 Hb_108331_010--Hb_003207_140 Hb_085438_010--Hb_002431_070 Hb_085438_010--Hb_004730_030 Hb_085438_010--Hb_000676_210 Hb_085438_010--Hb_003207_140 Hb_004337_010 Hb_004337_010 Hb_085438_010--Hb_004337_010 Hb_002431_070--Hb_004730_030 Hb_002431_070--Hb_000676_210 Hb_002431_070--Hb_003207_140 Hb_002431_070--Hb_004337_010 Hb_004730_030--Hb_000676_210 Hb_004730_030--Hb_003207_140 Hb_004730_030--Hb_004337_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0956994 0 0 0.181191

CAGE analysis