Hb_003226_280

Information

Type -
Description -
Location Contig3226: 198271-204627
Sequence    

Annotation

kegg
ID cic:CICLE_v10023300mg
description hypothetical protein
nr
ID XP_011011224.1
description PREDICTED: peter Pan-like protein [Populus euphratica]
swissprot
ID -
description -
trembl
ID V4TVN0
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10023300mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34193: 191931-200184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_280 0.0 - - PREDICTED: peter Pan-like protein [Populus euphratica]
2 Hb_000239_010 0.0671029944 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_000363_200 0.0707000014 - - 40S ribosomal protein S8, putative [Ricinus communis]
4 Hb_000865_070 0.0721604582 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
5 Hb_148200_010 0.0761425709 - - hypothetical protein 33 [Hevea brasiliensis]
6 Hb_000030_100 0.0762972429 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
7 Hb_000089_160 0.0793759731 - - 60S ribosomal protein L5B [Hevea brasiliensis]
8 Hb_000671_090 0.0813217737 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
9 Hb_000979_230 0.0832025264 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
10 Hb_001433_050 0.0848638509 - - 60S ribosomal protein L18, putative [Ricinus communis]
11 Hb_007943_090 0.0880036721 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
12 Hb_001691_210 0.0882844207 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
13 Hb_148930_010 0.0890857747 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
14 Hb_003097_210 0.0892361644 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
15 Hb_001998_050 0.0908974586 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
16 Hb_000227_230 0.0914428271 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
17 Hb_116898_010 0.0916246944 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
18 Hb_012675_060 0.0921446426 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
19 Hb_155764_010 0.0936902071 - - -
20 Hb_003175_040 0.0942704617 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003226_280 Hb_003226_280 Hb_000239_010 Hb_000239_010 Hb_003226_280--Hb_000239_010 Hb_000363_200 Hb_000363_200 Hb_003226_280--Hb_000363_200 Hb_000865_070 Hb_000865_070 Hb_003226_280--Hb_000865_070 Hb_148200_010 Hb_148200_010 Hb_003226_280--Hb_148200_010 Hb_000030_100 Hb_000030_100 Hb_003226_280--Hb_000030_100 Hb_000089_160 Hb_000089_160 Hb_003226_280--Hb_000089_160 Hb_000979_230 Hb_000979_230 Hb_000239_010--Hb_000979_230 Hb_009666_040 Hb_009666_040 Hb_000239_010--Hb_009666_040 Hb_116898_010 Hb_116898_010 Hb_000239_010--Hb_116898_010 Hb_001141_280 Hb_001141_280 Hb_000239_010--Hb_001141_280 Hb_000205_270 Hb_000205_270 Hb_000239_010--Hb_000205_270 Hb_000363_200--Hb_000865_070 Hb_003097_210 Hb_003097_210 Hb_000363_200--Hb_003097_210 Hb_001545_060 Hb_001545_060 Hb_000363_200--Hb_001545_060 Hb_002078_460 Hb_002078_460 Hb_000363_200--Hb_002078_460 Hb_000363_200--Hb_116898_010 Hb_000865_070--Hb_000089_160 Hb_010560_040 Hb_010560_040 Hb_000865_070--Hb_010560_040 Hb_000865_070--Hb_000030_100 Hb_000865_070--Hb_002078_460 Hb_001191_090 Hb_001191_090 Hb_148200_010--Hb_001191_090 Hb_003376_030 Hb_003376_030 Hb_148200_010--Hb_003376_030 Hb_003053_030 Hb_003053_030 Hb_148200_010--Hb_003053_030 Hb_001433_050 Hb_001433_050 Hb_148200_010--Hb_001433_050 Hb_004156_040 Hb_004156_040 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360 Hb_008289_060 Hb_008289_060 Hb_000030_100--Hb_008289_060 Hb_011465_040 Hb_011465_040 Hb_000030_100--Hb_011465_040 Hb_002918_200 Hb_002918_200 Hb_000030_100--Hb_002918_200 Hb_000030_100--Hb_000089_160 Hb_001109_020 Hb_001109_020 Hb_000030_100--Hb_001109_020 Hb_001691_210 Hb_001691_210 Hb_000089_160--Hb_001691_210 Hb_001718_100 Hb_001718_100 Hb_000089_160--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_000089_160--Hb_000086_570 Hb_001427_120 Hb_001427_120 Hb_000089_160--Hb_001427_120 Hb_003175_040 Hb_003175_040 Hb_000089_160--Hb_003175_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.10484 0.771737 1.07315 1.44376 3.15468 3.64993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.25365 7.94791 6.20993 3.98558 0.887965

CAGE analysis