Hb_003226_290

Information

Type -
Description -
Location Contig3226: 205342-206604
Sequence    

Annotation

kegg
ID rcu:RCOM_1178170
description catalytic, putative
nr
ID XP_002523083.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q0UIG9
description Mitochondrial zinc maintenance protein 1, mitochondrial OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=MZM1 PE=3 SV=2
trembl
ID B9SAR4
description Catalytic, putative OS=Ricinus communis GN=RCOM_1178170 PE=4 SV=1
Gene Ontology
ID GO:0003824
description mitochondrial zinc maintenance protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_290 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_000574_550 0.1647834265 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
3 Hb_187513_010 0.1837271873 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
4 Hb_005285_010 0.1844040321 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
5 Hb_162126_010 0.2106233448 - - -
6 Hb_000430_010 0.2108061113 - - -
7 Hb_125847_010 0.2122534006 - - -
8 Hb_010142_080 0.2159464396 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
9 Hb_000296_060 0.2183218115 - - -
10 Hb_008246_050 0.2215430712 - - -
11 Hb_005799_040 0.2215571203 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
12 Hb_048874_010 0.223542801 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
13 Hb_169574_010 0.2243903733 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
14 Hb_168311_010 0.2263484924 - - -
15 Hb_000139_440 0.235399679 - - unnamed protein product [Coffea canephora]
16 Hb_177179_010 0.2362193955 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
17 Hb_000590_020 0.2402976013 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
18 Hb_089173_010 0.2416809706 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
19 Hb_047040_010 0.2425053059 - - integrase [Gossypium herbaceum]
20 Hb_127993_010 0.2441207774 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_003226_290 Hb_003226_290 Hb_000574_550 Hb_000574_550 Hb_003226_290--Hb_000574_550 Hb_187513_010 Hb_187513_010 Hb_003226_290--Hb_187513_010 Hb_005285_010 Hb_005285_010 Hb_003226_290--Hb_005285_010 Hb_162126_010 Hb_162126_010 Hb_003226_290--Hb_162126_010 Hb_000430_010 Hb_000430_010 Hb_003226_290--Hb_000430_010 Hb_125847_010 Hb_125847_010 Hb_003226_290--Hb_125847_010 Hb_000574_550--Hb_187513_010 Hb_001652_110 Hb_001652_110 Hb_000574_550--Hb_001652_110 Hb_000065_050 Hb_000065_050 Hb_000574_550--Hb_000065_050 Hb_002571_090 Hb_002571_090 Hb_000574_550--Hb_002571_090 Hb_000296_060 Hb_000296_060 Hb_000574_550--Hb_000296_060 Hb_069783_020 Hb_069783_020 Hb_187513_010--Hb_069783_020 Hb_187513_010--Hb_000296_060 Hb_187513_010--Hb_002571_090 Hb_012424_010 Hb_012424_010 Hb_187513_010--Hb_012424_010 Hb_003551_030 Hb_003551_030 Hb_187513_010--Hb_003551_030 Hb_005285_010--Hb_162126_010 Hb_005285_010--Hb_000430_010 Hb_005285_010--Hb_125847_010 Hb_008246_050 Hb_008246_050 Hb_005285_010--Hb_008246_050 Hb_005799_040 Hb_005799_040 Hb_005285_010--Hb_005799_040 Hb_048874_010 Hb_048874_010 Hb_005285_010--Hb_048874_010 Hb_162126_010--Hb_000430_010 Hb_162126_010--Hb_125847_010 Hb_162126_010--Hb_008246_050 Hb_162126_010--Hb_005799_040 Hb_162126_010--Hb_048874_010 Hb_169574_010 Hb_169574_010 Hb_162126_010--Hb_169574_010 Hb_000430_010--Hb_125847_010 Hb_168311_010 Hb_168311_010 Hb_000430_010--Hb_168311_010 Hb_000430_010--Hb_008246_050 Hb_000430_010--Hb_005799_040 Hb_000430_010--Hb_048874_010 Hb_125847_010--Hb_168311_010 Hb_000139_440 Hb_000139_440 Hb_125847_010--Hb_000139_440 Hb_000590_020 Hb_000590_020 Hb_125847_010--Hb_000590_020 Hb_047040_010 Hb_047040_010 Hb_125847_010--Hb_047040_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.079384 0.124338 0.0265505 0 0.242301 0.357425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0637292 16.3723 7.90907 1.38622

CAGE analysis