Hb_003228_050

Information

Type -
Description -
Location Contig3228: 117159-128018
Sequence    

Annotation

kegg
ID rcu:RCOM_0279050
description protein with unknown function (EC:2.3.1.97)
nr
ID AIU80190.1
description chromomethylase [Hevea brasiliensis]
swissprot
ID Q9AXT8
description DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A PE=1 SV=1
trembl
ID A0A097RN48
description Chromomethylase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005634
description dna (cytosine-5)-methyltransferase cmt1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34227: 117512-122378 , PASA_asmbl_34228: 124608-124791 , PASA_asmbl_34229: 122873-128194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003228_050 0.0 - - chromomethylase [Hevea brasiliensis]
2 Hb_002030_130 0.1044218538 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
3 Hb_001524_120 0.105075601 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
4 Hb_007632_210 0.1060153074 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
5 Hb_124677_050 0.1110732563 - - conserved hypothetical protein [Ricinus communis]
6 Hb_101133_050 0.1121090149 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
7 Hb_000956_050 0.1130658288 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
8 Hb_005542_150 0.1132417019 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
9 Hb_001999_160 0.1146630855 - - hypothetical protein JCGZ_08488 [Jatropha curcas]
10 Hb_005183_150 0.1167407651 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
11 Hb_003813_090 0.1170865581 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
12 Hb_001348_100 0.1178444232 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
13 Hb_000500_340 0.1187893907 - - PREDICTED: exonuclease 1 [Jatropha curcas]
14 Hb_002311_090 0.1218908228 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
15 Hb_004531_080 0.1288748434 - - hypothetical protein RCOM_1491960 [Ricinus communis]
16 Hb_033041_010 0.1327968706 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
17 Hb_003360_010 0.1345664583 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
18 Hb_003106_090 0.1365833251 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
19 Hb_001863_010 0.1380037091 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
20 Hb_003109_010 0.1385709101 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]

Gene co-expression network

sample Hb_003228_050 Hb_003228_050 Hb_002030_130 Hb_002030_130 Hb_003228_050--Hb_002030_130 Hb_001524_120 Hb_001524_120 Hb_003228_050--Hb_001524_120 Hb_007632_210 Hb_007632_210 Hb_003228_050--Hb_007632_210 Hb_124677_050 Hb_124677_050 Hb_003228_050--Hb_124677_050 Hb_101133_050 Hb_101133_050 Hb_003228_050--Hb_101133_050 Hb_000956_050 Hb_000956_050 Hb_003228_050--Hb_000956_050 Hb_002030_130--Hb_001524_120 Hb_005183_150 Hb_005183_150 Hb_002030_130--Hb_005183_150 Hb_002030_130--Hb_124677_050 Hb_002030_130--Hb_007632_210 Hb_001999_160 Hb_001999_160 Hb_002030_130--Hb_001999_160 Hb_000431_100 Hb_000431_100 Hb_001524_120--Hb_000431_100 Hb_003360_010 Hb_003360_010 Hb_001524_120--Hb_003360_010 Hb_003813_090 Hb_003813_090 Hb_001524_120--Hb_003813_090 Hb_001524_120--Hb_005183_150 Hb_024682_030 Hb_024682_030 Hb_001524_120--Hb_024682_030 Hb_007632_210--Hb_005183_150 Hb_007632_210--Hb_124677_050 Hb_000661_150 Hb_000661_150 Hb_007632_210--Hb_000661_150 Hb_002311_090 Hb_002311_090 Hb_007632_210--Hb_002311_090 Hb_007632_210--Hb_101133_050 Hb_124677_050--Hb_003360_010 Hb_124677_050--Hb_005183_150 Hb_002284_260 Hb_002284_260 Hb_124677_050--Hb_002284_260 Hb_124677_050--Hb_002311_090 Hb_101133_050--Hb_002311_090 Hb_001307_150 Hb_001307_150 Hb_101133_050--Hb_001307_150 Hb_007474_020 Hb_007474_020 Hb_101133_050--Hb_007474_020 Hb_016898_020 Hb_016898_020 Hb_101133_050--Hb_016898_020 Hb_000317_120 Hb_000317_120 Hb_101133_050--Hb_000317_120 Hb_005276_090 Hb_005276_090 Hb_101133_050--Hb_005276_090 Hb_000190_220 Hb_000190_220 Hb_000956_050--Hb_000190_220 Hb_000956_050--Hb_003813_090 Hb_024714_090 Hb_024714_090 Hb_000956_050--Hb_024714_090 Hb_000907_140 Hb_000907_140 Hb_000956_050--Hb_000907_140 Hb_000956_050--Hb_002311_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0290338 0.198476 6.05497 3.89159 0.0156475 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.141902 0.265194 0.0532127 0.964438 1.00864

CAGE analysis