Hb_003228_070

Information

Type -
Description -
Location Contig3228: 131954-132520
Sequence    

Annotation

kegg
ID rcu:RCOM_0279070
description hypothetical protein
nr
ID XP_002530369.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q84WI0
description Zinc finger protein GIS OS=Arabidopsis thaliana GN=GIS PE=2 SV=1
trembl
ID B9SWK0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0279070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003228_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000173_200 0.0930599018 - - conserved hypothetical protein [Ricinus communis]
3 Hb_136850_040 0.1342880093 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_004607_100 0.2065271211 - - PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
5 Hb_002345_080 0.2352380156 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_003939_020 0.2461326811 - - PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
7 Hb_000836_590 0.2684305284 - - hypothetical protein JCGZ_14318 [Jatropha curcas]
8 Hb_004800_050 0.2834534717 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
9 Hb_002374_330 0.284485336 - - -
10 Hb_009773_040 0.2864619453 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000184_080 0.2895444748 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
12 Hb_000742_050 0.3005972077 - - hypothetical protein CL1373Contig1_03, partial [Pinus lambertiana]
13 Hb_039385_010 0.3006105224 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_011903_030 0.3006385839 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Populus euphratica]
15 Hb_000629_050 0.3006754495 - - -
16 Hb_005417_020 0.3006919059 - - -
17 Hb_129319_010 0.3006964751 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
18 Hb_005171_030 0.3007015866 - - hypothetical protein EUGRSUZ_H02434 [Eucalyptus grandis]
19 Hb_025248_030 0.3010869146 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
20 Hb_002232_330 0.3011816257 - - -

Gene co-expression network

sample Hb_003228_070 Hb_003228_070 Hb_000173_200 Hb_000173_200 Hb_003228_070--Hb_000173_200 Hb_136850_040 Hb_136850_040 Hb_003228_070--Hb_136850_040 Hb_004607_100 Hb_004607_100 Hb_003228_070--Hb_004607_100 Hb_002345_080 Hb_002345_080 Hb_003228_070--Hb_002345_080 Hb_003939_020 Hb_003939_020 Hb_003228_070--Hb_003939_020 Hb_000836_590 Hb_000836_590 Hb_003228_070--Hb_000836_590 Hb_000173_200--Hb_136850_040 Hb_000173_200--Hb_000836_590 Hb_001373_120 Hb_001373_120 Hb_000173_200--Hb_001373_120 Hb_003766_030 Hb_003766_030 Hb_000173_200--Hb_003766_030 Hb_008637_010 Hb_008637_010 Hb_000173_200--Hb_008637_010 Hb_000184_080 Hb_000184_080 Hb_136850_040--Hb_000184_080 Hb_136850_040--Hb_003939_020 Hb_009773_040 Hb_009773_040 Hb_136850_040--Hb_009773_040 Hb_000336_300 Hb_000336_300 Hb_136850_040--Hb_000336_300 Hb_000230_070 Hb_000230_070 Hb_004607_100--Hb_000230_070 Hb_143643_010 Hb_143643_010 Hb_004607_100--Hb_143643_010 Hb_004607_100--Hb_002345_080 Hb_000111_220 Hb_000111_220 Hb_004607_100--Hb_000111_220 Hb_004800_050 Hb_004800_050 Hb_004607_100--Hb_004800_050 Hb_040948_020 Hb_040948_020 Hb_002345_080--Hb_040948_020 Hb_002345_080--Hb_004800_050 Hb_001638_100 Hb_001638_100 Hb_002345_080--Hb_001638_100 Hb_001501_040 Hb_001501_040 Hb_002345_080--Hb_001501_040 Hb_003939_020--Hb_009773_040 Hb_003939_020--Hb_000836_590 Hb_002374_330 Hb_002374_330 Hb_003939_020--Hb_002374_330 Hb_158803_020 Hb_158803_020 Hb_003939_020--Hb_158803_020 Hb_181810_010 Hb_181810_010 Hb_003939_020--Hb_181810_010 Hb_000389_250 Hb_000389_250 Hb_000836_590--Hb_000389_250 Hb_000836_590--Hb_181810_010 Hb_006395_020 Hb_006395_020 Hb_000836_590--Hb_006395_020 Hb_000836_590--Hb_000111_220 Hb_001405_250 Hb_001405_250 Hb_000836_590--Hb_001405_250 Hb_002205_260 Hb_002205_260 Hb_000836_590--Hb_002205_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.14558 0.0721578 0 0.0444055 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis