Hb_003228_110

Information

Type -
Description -
Location Contig3228: 191026-200681
Sequence    

Annotation

kegg
ID rcu:RCOM_0033380
description hypothetical protein
nr
ID XP_012076045.1
description PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
swissprot
ID Q96DM3
description Uncharacterized protein C18orf8 OS=Homo sapiens GN=C18orf8 PE=2 SV=2
trembl
ID A0A067KE11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12759 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34233: 191370-199046 , PASA_asmbl_34234: 192597-192905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003228_110 0.0 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
2 Hb_002053_150 0.0693427369 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
3 Hb_002007_080 0.0723171838 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
4 Hb_002071_070 0.0767846012 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
5 Hb_000778_010 0.0768825467 - - hypothetical protein [Bacillus subtilis]
6 Hb_001998_240 0.0784543409 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
7 Hb_002456_010 0.0789407665 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
8 Hb_002232_360 0.0794074842 - - PREDICTED: proline iminopeptidase isoform X2 [Jatropha curcas]
9 Hb_011883_020 0.0801247257 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
10 Hb_002411_110 0.0804306013 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
11 Hb_003943_110 0.0813574856 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
12 Hb_001876_050 0.0819132571 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
13 Hb_001671_100 0.0825770201 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
14 Hb_003528_050 0.083251053 - - protein transporter, putative [Ricinus communis]
15 Hb_002675_130 0.0835893111 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
16 Hb_001541_290 0.0840172571 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
17 Hb_001999_310 0.0843865804 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
18 Hb_000107_660 0.0853754718 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
19 Hb_008948_020 0.0859283716 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
20 Hb_001124_130 0.0860229053 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003228_110 Hb_003228_110 Hb_002053_150 Hb_002053_150 Hb_003228_110--Hb_002053_150 Hb_002007_080 Hb_002007_080 Hb_003228_110--Hb_002007_080 Hb_002071_070 Hb_002071_070 Hb_003228_110--Hb_002071_070 Hb_000778_010 Hb_000778_010 Hb_003228_110--Hb_000778_010 Hb_001998_240 Hb_001998_240 Hb_003228_110--Hb_001998_240 Hb_002456_010 Hb_002456_010 Hb_003228_110--Hb_002456_010 Hb_002053_150--Hb_001998_240 Hb_006816_280 Hb_006816_280 Hb_002053_150--Hb_006816_280 Hb_003411_040 Hb_003411_040 Hb_002053_150--Hb_003411_040 Hb_003494_230 Hb_003494_230 Hb_002053_150--Hb_003494_230 Hb_001541_290 Hb_001541_290 Hb_002053_150--Hb_001541_290 Hb_000392_420 Hb_000392_420 Hb_002007_080--Hb_000392_420 Hb_002007_080--Hb_000778_010 Hb_007894_150 Hb_007894_150 Hb_002007_080--Hb_007894_150 Hb_164390_010 Hb_164390_010 Hb_002007_080--Hb_164390_010 Hb_000349_260 Hb_000349_260 Hb_002007_080--Hb_000349_260 Hb_000173_280 Hb_000173_280 Hb_002007_080--Hb_000173_280 Hb_000856_040 Hb_000856_040 Hb_002071_070--Hb_000856_040 Hb_002042_050 Hb_002042_050 Hb_002071_070--Hb_002042_050 Hb_003058_260 Hb_003058_260 Hb_002071_070--Hb_003058_260 Hb_002890_130 Hb_002890_130 Hb_002071_070--Hb_002890_130 Hb_002830_010 Hb_002830_010 Hb_002071_070--Hb_002830_010 Hb_012632_010 Hb_012632_010 Hb_002071_070--Hb_012632_010 Hb_000778_010--Hb_000392_420 Hb_000663_060 Hb_000663_060 Hb_000778_010--Hb_000663_060 Hb_000365_230 Hb_000365_230 Hb_000778_010--Hb_000365_230 Hb_000778_010--Hb_164390_010 Hb_007472_070 Hb_007472_070 Hb_000778_010--Hb_007472_070 Hb_000778_010--Hb_000173_280 Hb_001998_240--Hb_006816_280 Hb_004787_050 Hb_004787_050 Hb_001998_240--Hb_004787_050 Hb_001998_240--Hb_003058_260 Hb_003943_110 Hb_003943_110 Hb_001998_240--Hb_003943_110 Hb_002675_130 Hb_002675_130 Hb_001998_240--Hb_002675_130 Hb_000111_290 Hb_000111_290 Hb_002456_010--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_002456_010--Hb_001876_050 Hb_000614_240 Hb_000614_240 Hb_002456_010--Hb_000614_240 Hb_004324_130 Hb_004324_130 Hb_002456_010--Hb_004324_130 Hb_003544_060 Hb_003544_060 Hb_002456_010--Hb_003544_060 Hb_000920_300 Hb_000920_300 Hb_002456_010--Hb_000920_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.81899 13.8385 14.1423 12.8351 8.76539 9.86164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.71361 13.5745 14.6127 20.9356 13.5708

CAGE analysis