Hb_003236_010

Information

Type -
Description -
Location Contig3236: 11517-25122
Sequence    

Annotation

kegg
ID rcu:RCOM_0616280
description hypothetical protein
nr
ID XP_012074496.1
description PREDICTED: uncharacterized protein LOC105635957 [Jatropha curcas]
swissprot
ID Q80TE0
description RNA polymerase II-associated protein 1 OS=Mus musculus GN=Rpap1 PE=1 SV=2
trembl
ID A0A067KUP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08395 PE=4 SV=1
Gene Ontology
ID GO:0004871
description rna polymerase ii-associated protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34238: 14703-22981 , PASA_asmbl_34239: 22607-23007 , PASA_asmbl_34240: 23012-23491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003236_010 0.0 - - PREDICTED: uncharacterized protein LOC105635957 [Jatropha curcas]
2 Hb_002217_150 0.0835278405 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
3 Hb_000108_080 0.0885105619 - - PREDICTED: importin-5 [Jatropha curcas]
4 Hb_006816_120 0.1035540091 - - Nicotianamine synthase, putative [Ricinus communis]
5 Hb_002411_120 0.1076822728 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
6 Hb_027073_060 0.1082796908 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
7 Hb_001080_270 0.1121072524 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
8 Hb_000504_150 0.1124712397 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
9 Hb_000227_380 0.1128487735 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
10 Hb_002471_210 0.1142215899 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
11 Hb_000594_020 0.1148207813 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
12 Hb_000832_130 0.1152139231 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
13 Hb_001152_030 0.1177590374 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
14 Hb_005462_020 0.1204113693 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
15 Hb_001221_150 0.1216905979 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
16 Hb_005843_040 0.1240889773 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
17 Hb_000640_200 0.1242432974 - - hypothetical protein RCOM_1346600 [Ricinus communis]
18 Hb_000832_300 0.1243801836 - - -
19 Hb_009558_040 0.1248349372 transcription factor TF Family: MYB hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
20 Hb_111985_080 0.1250986417 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]

Gene co-expression network

sample Hb_003236_010 Hb_003236_010 Hb_002217_150 Hb_002217_150 Hb_003236_010--Hb_002217_150 Hb_000108_080 Hb_000108_080 Hb_003236_010--Hb_000108_080 Hb_006816_120 Hb_006816_120 Hb_003236_010--Hb_006816_120 Hb_002411_120 Hb_002411_120 Hb_003236_010--Hb_002411_120 Hb_027073_060 Hb_027073_060 Hb_003236_010--Hb_027073_060 Hb_001080_270 Hb_001080_270 Hb_003236_010--Hb_001080_270 Hb_007849_020 Hb_007849_020 Hb_002217_150--Hb_007849_020 Hb_002471_210 Hb_002471_210 Hb_002217_150--Hb_002471_210 Hb_001433_190 Hb_001433_190 Hb_002217_150--Hb_001433_190 Hb_002291_070 Hb_002291_070 Hb_002217_150--Hb_002291_070 Hb_000227_380 Hb_000227_380 Hb_002217_150--Hb_000227_380 Hb_031069_020 Hb_031069_020 Hb_000108_080--Hb_031069_020 Hb_004037_030 Hb_004037_030 Hb_000108_080--Hb_004037_030 Hb_000640_200 Hb_000640_200 Hb_000108_080--Hb_000640_200 Hb_005462_020 Hb_005462_020 Hb_000108_080--Hb_005462_020 Hb_022250_110 Hb_022250_110 Hb_000108_080--Hb_022250_110 Hb_006882_010 Hb_006882_010 Hb_006816_120--Hb_006882_010 Hb_017711_020 Hb_017711_020 Hb_006816_120--Hb_017711_020 Hb_000258_130 Hb_000258_130 Hb_006816_120--Hb_000258_130 Hb_000152_560 Hb_000152_560 Hb_006816_120--Hb_000152_560 Hb_000940_040 Hb_000940_040 Hb_006816_120--Hb_000940_040 Hb_000594_020 Hb_000594_020 Hb_002411_120--Hb_000594_020 Hb_009151_020 Hb_009151_020 Hb_002411_120--Hb_009151_020 Hb_002411_120--Hb_001080_270 Hb_020665_030 Hb_020665_030 Hb_002411_120--Hb_020665_030 Hb_002499_070 Hb_002499_070 Hb_002411_120--Hb_002499_070 Hb_004899_070 Hb_004899_070 Hb_002411_120--Hb_004899_070 Hb_000096_180 Hb_000096_180 Hb_027073_060--Hb_000096_180 Hb_007885_070 Hb_007885_070 Hb_027073_060--Hb_007885_070 Hb_025477_060 Hb_025477_060 Hb_027073_060--Hb_025477_060 Hb_000250_070 Hb_000250_070 Hb_027073_060--Hb_000250_070 Hb_000357_080 Hb_000357_080 Hb_027073_060--Hb_000357_080 Hb_002043_170 Hb_002043_170 Hb_027073_060--Hb_002043_170 Hb_001080_270--Hb_000227_380 Hb_004718_010 Hb_004718_010 Hb_001080_270--Hb_004718_010 Hb_000997_030 Hb_000997_030 Hb_001080_270--Hb_000997_030 Hb_000959_040 Hb_000959_040 Hb_001080_270--Hb_000959_040 Hb_000813_100 Hb_000813_100 Hb_001080_270--Hb_000813_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.27052 9.30717 1.87769 2.17479 19.3186 13.9454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.50512 2.30951 3.34366 6.16663 5.36972

CAGE analysis