Hb_003237_040

Information

Type -
Description -
Location Contig3237: 75327-80480
Sequence    

Annotation

kegg
ID rcu:RCOM_0823630
description Ent-kaurene synthase B, chloroplast precursor, putative (EC:4.2.3.19)
nr
ID XP_002525841.1
description Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q39548
description Ent-kaur-16-ene synthase, chloroplastic OS=Cucurbita maxima PE=1 SV=1
trembl
ID B9SIM2
description Ent-kaurene synthase B, chloroplast, putative OS=Ricinus communis GN=RCOM_0823630 PE=4 SV=1
Gene Ontology
ID GO:0000287
description ent-kaurene synthase chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34241: 75899-78253 , PASA_asmbl_34242: 78523-79056 , PASA_asmbl_34243: 79215-80499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003237_040 0.0 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
2 Hb_007491_010 0.0622799427 - - Spotted leaf protein, putative [Ricinus communis]
3 Hb_000127_250 0.0763092749 - - Alliin lyase precursor, putative [Ricinus communis]
4 Hb_058620_040 0.0871408275 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
5 Hb_135392_010 0.0889754931 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
6 Hb_007417_020 0.0941634273 - - Reticuline oxidase precursor, putative [Ricinus communis]
7 Hb_058620_050 0.0974680361 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
8 Hb_002173_080 0.0980758471 - - alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_000487_150 0.1041566888 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
10 Hb_005120_010 0.1051867287 - - amino acid transporter, putative [Ricinus communis]
11 Hb_039562_010 0.1056798458 - - PREDICTED: protein SRG1-like [Jatropha curcas]
12 Hb_004693_010 0.1070498592 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
13 Hb_000141_070 0.1079056138 - - l-lactate dehydrogenase, putative [Ricinus communis]
14 Hb_004097_080 0.1103998609 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
15 Hb_000318_440 0.1105677816 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
16 Hb_001948_040 0.1113034719 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
17 Hb_000329_160 0.1116185393 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
18 Hb_009026_040 0.1123018829 - - pathogenesis-related family protein [Populus trichocarpa]
19 Hb_003334_080 0.1130983595 - - Reticuline oxidase precursor, putative [Ricinus communis]
20 Hb_000221_200 0.1137597768 - - hypothetical protein JCGZ_15819 [Jatropha curcas]

Gene co-expression network

sample Hb_003237_040 Hb_003237_040 Hb_007491_010 Hb_007491_010 Hb_003237_040--Hb_007491_010 Hb_000127_250 Hb_000127_250 Hb_003237_040--Hb_000127_250 Hb_058620_040 Hb_058620_040 Hb_003237_040--Hb_058620_040 Hb_135392_010 Hb_135392_010 Hb_003237_040--Hb_135392_010 Hb_007417_020 Hb_007417_020 Hb_003237_040--Hb_007417_020 Hb_058620_050 Hb_058620_050 Hb_003237_040--Hb_058620_050 Hb_007491_010--Hb_135392_010 Hb_007491_010--Hb_007417_020 Hb_001464_010 Hb_001464_010 Hb_007491_010--Hb_001464_010 Hb_004448_030 Hb_004448_030 Hb_007491_010--Hb_004448_030 Hb_004097_080 Hb_004097_080 Hb_007491_010--Hb_004097_080 Hb_012532_020 Hb_012532_020 Hb_000127_250--Hb_012532_020 Hb_185391_010 Hb_185391_010 Hb_000127_250--Hb_185391_010 Hb_000059_100 Hb_000059_100 Hb_000127_250--Hb_000059_100 Hb_000127_250--Hb_058620_050 Hb_015146_010 Hb_015146_010 Hb_000127_250--Hb_015146_010 Hb_058620_040--Hb_058620_050 Hb_003334_080 Hb_003334_080 Hb_058620_040--Hb_003334_080 Hb_000141_070 Hb_000141_070 Hb_058620_040--Hb_000141_070 Hb_004693_010 Hb_004693_010 Hb_058620_040--Hb_004693_010 Hb_006925_010 Hb_006925_010 Hb_058620_040--Hb_006925_010 Hb_000086_710 Hb_000086_710 Hb_058620_040--Hb_000086_710 Hb_135392_010--Hb_007417_020 Hb_001134_040 Hb_001134_040 Hb_135392_010--Hb_001134_040 Hb_058620_010 Hb_058620_010 Hb_135392_010--Hb_058620_010 Hb_135392_010--Hb_001464_010 Hb_135392_010--Hb_004097_080 Hb_007417_020--Hb_001464_010 Hb_007417_020--Hb_001134_040 Hb_003090_070 Hb_003090_070 Hb_007417_020--Hb_003090_070 Hb_002805_230 Hb_002805_230 Hb_007417_020--Hb_002805_230 Hb_058620_050--Hb_000141_070 Hb_058620_050--Hb_003334_080 Hb_058620_050--Hb_004693_010 Hb_009568_010 Hb_009568_010 Hb_058620_050--Hb_009568_010 Hb_007483_040 Hb_007483_040 Hb_058620_050--Hb_007483_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0872271 1.12394 0.371477 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.013897 0 33.0229 0.827119

CAGE analysis