Hb_003238_010

Information

Type -
Description -
Location Contig3238: 13949-14359
Sequence    

Annotation

kegg
ID vvi:104880636
description uncharacterized LOC104880636
nr
ID XP_010656238.1
description PREDICTED: uncharacterized protein LOC104880636 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AL71
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031077 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003238_010 0.0 - - PREDICTED: uncharacterized protein LOC104880636 [Vitis vinifera]
2 Hb_000248_120 0.2685589427 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
3 Hb_147996_010 0.2742504333 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
4 Hb_000407_060 0.2854165754 - - -
5 Hb_000915_150 0.2950268682 - - -
6 Hb_012103_010 0.2962295142 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
7 Hb_000175_550 0.3003329726 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
8 Hb_057247_010 0.3005517381 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
9 Hb_002367_120 0.3061190427 - - -
10 Hb_000191_160 0.3089582298 - - hypothetical protein EUGRSUZ_C03547 [Eucalyptus grandis]
11 Hb_000849_050 0.3134895827 - - hypothetical protein VITISV_010852 [Vitis vinifera]
12 Hb_003780_040 0.3135511665 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
13 Hb_001810_020 0.3140656462 - - -
14 Hb_186304_010 0.3213047118 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
15 Hb_029393_020 0.3332862225 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
16 Hb_006913_050 0.339745353 - - -
17 Hb_111834_020 0.3454221962 - - PREDICTED: protein phosphatase methylesterase 1 [Jatropha curcas]
18 Hb_003658_030 0.3459413795 - - -
19 Hb_073096_010 0.3523628293 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 45-like [Jatropha curcas]
20 Hb_001489_140 0.3579026758 transcription factor TF Family: AP2 hypothetical protein JCGZ_21694 [Jatropha curcas]

Gene co-expression network

sample Hb_003238_010 Hb_003238_010 Hb_000248_120 Hb_000248_120 Hb_003238_010--Hb_000248_120 Hb_147996_010 Hb_147996_010 Hb_003238_010--Hb_147996_010 Hb_000407_060 Hb_000407_060 Hb_003238_010--Hb_000407_060 Hb_000915_150 Hb_000915_150 Hb_003238_010--Hb_000915_150 Hb_012103_010 Hb_012103_010 Hb_003238_010--Hb_012103_010 Hb_000175_550 Hb_000175_550 Hb_003238_010--Hb_000175_550 Hb_000248_120--Hb_000407_060 Hb_000248_120--Hb_012103_010 Hb_000248_120--Hb_000175_550 Hb_111834_020 Hb_111834_020 Hb_000248_120--Hb_111834_020 Hb_000701_070 Hb_000701_070 Hb_000248_120--Hb_000701_070 Hb_000610_020 Hb_000610_020 Hb_147996_010--Hb_000610_020 Hb_029393_020 Hb_029393_020 Hb_147996_010--Hb_029393_020 Hb_010921_090 Hb_010921_090 Hb_147996_010--Hb_010921_090 Hb_001486_140 Hb_001486_140 Hb_147996_010--Hb_001486_140 Hb_002367_120 Hb_002367_120 Hb_147996_010--Hb_002367_120 Hb_006615_040 Hb_006615_040 Hb_147996_010--Hb_006615_040 Hb_000407_060--Hb_002367_120 Hb_172632_020 Hb_172632_020 Hb_000407_060--Hb_172632_020 Hb_027337_070 Hb_027337_070 Hb_000407_060--Hb_027337_070 Hb_004361_030 Hb_004361_030 Hb_000407_060--Hb_004361_030 Hb_057217_010 Hb_057217_010 Hb_000407_060--Hb_057217_010 Hb_001489_140 Hb_001489_140 Hb_000915_150--Hb_001489_140 Hb_011377_010 Hb_011377_010 Hb_000915_150--Hb_011377_010 Hb_084858_010 Hb_084858_010 Hb_000915_150--Hb_084858_010 Hb_057247_010 Hb_057247_010 Hb_000915_150--Hb_057247_010 Hb_000849_050 Hb_000849_050 Hb_000915_150--Hb_000849_050 Hb_172572_010 Hb_172572_010 Hb_000915_150--Hb_172572_010 Hb_000191_160 Hb_000191_160 Hb_012103_010--Hb_000191_160 Hb_007223_020 Hb_007223_020 Hb_012103_010--Hb_007223_020 Hb_004885_020 Hb_004885_020 Hb_012103_010--Hb_004885_020 Hb_003780_040 Hb_003780_040 Hb_012103_010--Hb_003780_040 Hb_176121_010 Hb_176121_010 Hb_000175_550--Hb_176121_010 Hb_003658_030 Hb_003658_030 Hb_000175_550--Hb_003658_030 Hb_000175_550--Hb_000701_070 Hb_000175_550--Hb_002367_120 Hb_005214_020 Hb_005214_020 Hb_000175_550--Hb_005214_020 Hb_104498_030 Hb_104498_030 Hb_000175_550--Hb_104498_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.279653 0.32267 0.140372 0 0.363465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.126759 0

CAGE analysis