Hb_003238_030

Information

Type -
Description -
Location Contig3238: 44132-47164
Sequence    

Annotation

kegg
ID egr:104428632
description leucine-rich repeat receptor-like protein kinase PEPR2
nr
ID KCW54405.1
description hypothetical protein EUGRSUZ_I00356 [Eucalyptus grandis]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID A0A059ALZ5
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00356 PE=4 SV=1
Gene Ontology
ID GO:0005515
description scab resistance family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003238_030 0.0 - - hypothetical protein EUGRSUZ_I00356 [Eucalyptus grandis]
2 Hb_000380_200 0.1712606471 - - -
3 Hb_000295_010 0.2219177366 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_178884_010 0.2504374276 - - putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
5 Hb_000189_420 0.2508150171 - - PREDICTED: uncharacterized protein LOC105647665 [Jatropha curcas]
6 Hb_006810_070 0.2598089986 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_000640_150 0.2662140296 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
8 Hb_002299_050 0.2677278471 - - PREDICTED: chalcone--flavonone isomerase isoform X1 [Pyrus x bretschneideri]
9 Hb_011639_010 0.2694917371 - - -
10 Hb_003656_120 0.2727465179 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
11 Hb_010565_020 0.2799609826 - - -
12 Hb_009848_030 0.2825530745 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
13 Hb_003311_050 0.2876392888 - - PREDICTED: two-pore potassium channel 1-like [Jatropha curcas]
14 Hb_000021_100 0.287899975 - - -
15 Hb_008616_030 0.2882865171 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
16 Hb_009848_010 0.2960569121 - - putative acyl-activating enzyme 16, chloroplastic -like protein [Gossypium arboreum]
17 Hb_000504_090 0.2975468771 - - PREDICTED: titin isoform X10 [Jatropha curcas]
18 Hb_007101_220 0.2983742181 - - Gibberellin-regulated protein 3 precursor, putative [Ricinus communis]
19 Hb_012395_080 0.3006919331 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
20 Hb_000445_300 0.3025648452 - - PREDICTED: wall-associated receptor kinase 5-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_003238_030 Hb_003238_030 Hb_000380_200 Hb_000380_200 Hb_003238_030--Hb_000380_200 Hb_000295_010 Hb_000295_010 Hb_003238_030--Hb_000295_010 Hb_178884_010 Hb_178884_010 Hb_003238_030--Hb_178884_010 Hb_000189_420 Hb_000189_420 Hb_003238_030--Hb_000189_420 Hb_006810_070 Hb_006810_070 Hb_003238_030--Hb_006810_070 Hb_000640_150 Hb_000640_150 Hb_003238_030--Hb_000640_150 Hb_001678_020 Hb_001678_020 Hb_000380_200--Hb_001678_020 Hb_000103_360 Hb_000103_360 Hb_000380_200--Hb_000103_360 Hb_000380_200--Hb_000295_010 Hb_000384_040 Hb_000384_040 Hb_000380_200--Hb_000384_040 Hb_002299_050 Hb_002299_050 Hb_000380_200--Hb_002299_050 Hb_005389_110 Hb_005389_110 Hb_000295_010--Hb_005389_110 Hb_018344_010 Hb_018344_010 Hb_000295_010--Hb_018344_010 Hb_116125_010 Hb_116125_010 Hb_000295_010--Hb_116125_010 Hb_003656_120 Hb_003656_120 Hb_000295_010--Hb_003656_120 Hb_001014_130 Hb_001014_130 Hb_178884_010--Hb_001014_130 Hb_036702_010 Hb_036702_010 Hb_178884_010--Hb_036702_010 Hb_000236_090 Hb_000236_090 Hb_178884_010--Hb_000236_090 Hb_178884_010--Hb_002299_050 Hb_009848_010 Hb_009848_010 Hb_178884_010--Hb_009848_010 Hb_000211_070 Hb_000211_070 Hb_000189_420--Hb_000211_070 Hb_000101_210 Hb_000101_210 Hb_000189_420--Hb_000101_210 Hb_004206_040 Hb_004206_040 Hb_000189_420--Hb_004206_040 Hb_000890_220 Hb_000890_220 Hb_000189_420--Hb_000890_220 Hb_001247_140 Hb_001247_140 Hb_000189_420--Hb_001247_140 Hb_001811_060 Hb_001811_060 Hb_000189_420--Hb_001811_060 Hb_007101_220 Hb_007101_220 Hb_006810_070--Hb_007101_220 Hb_000123_250 Hb_000123_250 Hb_006810_070--Hb_000123_250 Hb_010565_020 Hb_010565_020 Hb_006810_070--Hb_010565_020 Hb_030827_050 Hb_030827_050 Hb_006810_070--Hb_030827_050 Hb_006083_060 Hb_006083_060 Hb_006810_070--Hb_006083_060 Hb_012404_040 Hb_012404_040 Hb_000640_150--Hb_012404_040 Hb_000270_210 Hb_000270_210 Hb_000640_150--Hb_000270_210 Hb_000003_390 Hb_000003_390 Hb_000640_150--Hb_000003_390 Hb_007846_040 Hb_007846_040 Hb_000640_150--Hb_007846_040 Hb_010261_010 Hb_010261_010 Hb_000640_150--Hb_010261_010 Hb_003157_010 Hb_003157_010 Hb_000640_150--Hb_003157_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.167205 0.153731 0.055995 0.00613376 0.399143 0.419871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.385399 0.0307552

CAGE analysis