Hb_003244_020

Information

Type -
Description -
Location Contig3244: 13557-18041
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04140g
description POPTRDRAFT_1084309; serine carboxypeptidase S10 family protein
nr
ID XP_012086498.1
description PREDICTED: serine carboxypeptidase-like 27 [Jatropha curcas]
swissprot
ID Q9SFB5
description Serine carboxypeptidase-like 27 OS=Arabidopsis thaliana GN=SCPL27 PE=2 SV=1
trembl
ID A0A067K0H7
description Carboxypeptidase OS=Jatropha curcas GN=JCGZ_23946 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34248: 13564-14244 , PASA_asmbl_34249: 15725-17941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003244_020 0.0 - - PREDICTED: serine carboxypeptidase-like 27 [Jatropha curcas]
2 Hb_000244_170 0.0786935136 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
3 Hb_000127_140 0.1163124751 - - transporter-related family protein [Populus trichocarpa]
4 Hb_007894_010 0.1166121052 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
5 Hb_002184_090 0.1179280166 - - DNA binding protein, putative [Ricinus communis]
6 Hb_166574_010 0.1191570194 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
7 Hb_013394_050 0.1235632126 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
8 Hb_000062_330 0.1272656376 - - unknown [Lotus japonicus]
9 Hb_010407_140 0.1343709734 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
10 Hb_000181_350 0.1350471855 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
11 Hb_010368_050 0.1391318435 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
12 Hb_000197_020 0.1398909651 - - PREDICTED: protein RER1A [Jatropha curcas]
13 Hb_000854_040 0.144344385 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
14 Hb_000066_030 0.1467509675 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
15 Hb_002174_040 0.1518045789 - - DNAJ heat shock family protein [Theobroma cacao]
16 Hb_071130_050 0.1528906304 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
17 Hb_001951_130 0.1540698781 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
18 Hb_019181_030 0.1543693702 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
19 Hb_011282_060 0.1550282505 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
20 Hb_002863_030 0.1551700502 - - unknown [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_003244_020 Hb_003244_020 Hb_000244_170 Hb_000244_170 Hb_003244_020--Hb_000244_170 Hb_000127_140 Hb_000127_140 Hb_003244_020--Hb_000127_140 Hb_007894_010 Hb_007894_010 Hb_003244_020--Hb_007894_010 Hb_002184_090 Hb_002184_090 Hb_003244_020--Hb_002184_090 Hb_166574_010 Hb_166574_010 Hb_003244_020--Hb_166574_010 Hb_013394_050 Hb_013394_050 Hb_003244_020--Hb_013394_050 Hb_000062_330 Hb_000062_330 Hb_000244_170--Hb_000062_330 Hb_000244_170--Hb_013394_050 Hb_000244_170--Hb_007894_010 Hb_000244_170--Hb_002184_090 Hb_000197_020 Hb_000197_020 Hb_000244_170--Hb_000197_020 Hb_000127_140--Hb_007894_010 Hb_008147_090 Hb_008147_090 Hb_000127_140--Hb_008147_090 Hb_001951_130 Hb_001951_130 Hb_000127_140--Hb_001951_130 Hb_001195_060 Hb_001195_060 Hb_000127_140--Hb_001195_060 Hb_000666_100 Hb_000666_100 Hb_000127_140--Hb_000666_100 Hb_000127_140--Hb_002184_090 Hb_010407_140 Hb_010407_140 Hb_007894_010--Hb_010407_140 Hb_005701_120 Hb_005701_120 Hb_007894_010--Hb_005701_120 Hb_007894_010--Hb_000197_020 Hb_000136_100 Hb_000136_100 Hb_007894_010--Hb_000136_100 Hb_001957_010 Hb_001957_010 Hb_007894_010--Hb_001957_010 Hb_002184_090--Hb_001195_060 Hb_000329_210 Hb_000329_210 Hb_002184_090--Hb_000329_210 Hb_004257_010 Hb_004257_010 Hb_002184_090--Hb_004257_010 Hb_002184_090--Hb_008147_090 Hb_180343_010 Hb_180343_010 Hb_002184_090--Hb_180343_010 Hb_166574_010--Hb_000127_140 Hb_166574_010--Hb_008147_090 Hb_166574_010--Hb_007894_010 Hb_001865_090 Hb_001865_090 Hb_166574_010--Hb_001865_090 Hb_010368_050 Hb_010368_050 Hb_166574_010--Hb_010368_050 Hb_000181_350 Hb_000181_350 Hb_166574_010--Hb_000181_350 Hb_000069_640 Hb_000069_640 Hb_013394_050--Hb_000069_640 Hb_019181_030 Hb_019181_030 Hb_013394_050--Hb_019181_030 Hb_013394_050--Hb_000197_020 Hb_000742_020 Hb_000742_020 Hb_013394_050--Hb_000742_020 Hb_004055_120 Hb_004055_120 Hb_013394_050--Hb_004055_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.486182 0.481938 3.40892 4.98346 1.13979 1.76887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.68396 1.65068 3.44105 1.41984 1.50582

CAGE analysis