Hb_003248_030

Information

Type -
Description -
Location Contig3248: 53319-56886
Sequence    

Annotation

kegg
ID rcu:RCOM_0823630
description Ent-kaurene synthase B, chloroplast precursor, putative (EC:4.2.3.19)
nr
ID XP_002525841.1
description Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q0JA82
description Ent-kaur-16-ene synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=KS1 PE=1 SV=1
trembl
ID B9SIM2
description Ent-kaurene synthase B, chloroplast, putative OS=Ricinus communis GN=RCOM_0823630 PE=4 SV=1
Gene Ontology
ID GO:0000287
description ent-kaurene synthase chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003248_030 0.0 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
2 Hb_003502_040 0.0438311529 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
3 Hb_004316_020 0.0980634263 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Jatropha curcas]
4 Hb_018563_010 0.1029636742 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
5 Hb_029262_010 0.1057011876 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
6 Hb_005694_170 0.1081887125 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
7 Hb_000809_130 0.1167000068 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
8 Hb_003376_110 0.119862639 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007846_030 0.1250470335 - - Uncharacterized protein TCM_021839 [Theobroma cacao]
10 Hb_004005_060 0.1284112058 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
11 Hb_000213_020 0.1291406252 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000392_170 0.1307289978 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
13 Hb_006873_010 0.1307826807 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_024714_090 0.1324432937 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
15 Hb_164337_010 0.1338335373 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
16 Hb_007426_190 0.13392247 - - PREDICTED: uncharacterized protein LOC103325200 [Prunus mume]
17 Hb_003207_210 0.1341295713 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]
18 Hb_000160_190 0.1342622791 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
19 Hb_001715_060 0.1371163192 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
20 Hb_000103_370 0.13880804 - - PREDICTED: protein argonaute 10 [Jatropha curcas]

Gene co-expression network

sample Hb_003248_030 Hb_003248_030 Hb_003502_040 Hb_003502_040 Hb_003248_030--Hb_003502_040 Hb_004316_020 Hb_004316_020 Hb_003248_030--Hb_004316_020 Hb_018563_010 Hb_018563_010 Hb_003248_030--Hb_018563_010 Hb_029262_010 Hb_029262_010 Hb_003248_030--Hb_029262_010 Hb_005694_170 Hb_005694_170 Hb_003248_030--Hb_005694_170 Hb_000809_130 Hb_000809_130 Hb_003248_030--Hb_000809_130 Hb_003502_040--Hb_018563_010 Hb_003502_040--Hb_029262_010 Hb_003502_040--Hb_004316_020 Hb_000438_200 Hb_000438_200 Hb_003502_040--Hb_000438_200 Hb_003502_040--Hb_005694_170 Hb_006873_010 Hb_006873_010 Hb_004316_020--Hb_006873_010 Hb_000392_170 Hb_000392_170 Hb_004316_020--Hb_000392_170 Hb_003207_210 Hb_003207_210 Hb_004316_020--Hb_003207_210 Hb_164337_010 Hb_164337_010 Hb_004316_020--Hb_164337_010 Hb_004553_040 Hb_004553_040 Hb_018563_010--Hb_004553_040 Hb_167206_010 Hb_167206_010 Hb_018563_010--Hb_167206_010 Hb_018563_010--Hb_000438_200 Hb_000319_010 Hb_000319_010 Hb_018563_010--Hb_000319_010 Hb_004308_030 Hb_004308_030 Hb_029262_010--Hb_004308_030 Hb_000160_190 Hb_000160_190 Hb_029262_010--Hb_000160_190 Hb_004202_030 Hb_004202_030 Hb_029262_010--Hb_004202_030 Hb_006501_080 Hb_006501_080 Hb_029262_010--Hb_006501_080 Hb_000049_030 Hb_000049_030 Hb_029262_010--Hb_000049_030 Hb_003376_110 Hb_003376_110 Hb_005694_170--Hb_003376_110 Hb_005694_170--Hb_164337_010 Hb_007846_030 Hb_007846_030 Hb_005694_170--Hb_007846_030 Hb_005694_170--Hb_003207_210 Hb_000933_040 Hb_000933_040 Hb_005694_170--Hb_000933_040 Hb_004223_080 Hb_004223_080 Hb_000809_130--Hb_004223_080 Hb_000103_370 Hb_000103_370 Hb_000809_130--Hb_000103_370 Hb_006196_030 Hb_006196_030 Hb_000809_130--Hb_006196_030 Hb_000905_100 Hb_000905_100 Hb_000809_130--Hb_000905_100 Hb_000002_370 Hb_000002_370 Hb_000809_130--Hb_000002_370 Hb_002301_400 Hb_002301_400 Hb_000809_130--Hb_002301_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00785265 3.52326 12.6934 9.50298 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0178232 0.0140248 0 0.133671 2.44408

CAGE analysis