Hb_003253_010

Information

Type -
Description -
Location Contig3253: 11183-13701
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07560g
description POPTRDRAFT_835476; hypothetical protein
nr
ID XP_011004668.1
description PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067KJ85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08826 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34268: 12526-12661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003253_010 0.0 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
2 Hb_010098_080 0.084414108 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
3 Hb_003777_070 0.1004155171 - - -
4 Hb_007810_050 0.1011838057 - - protein with unknown function [Ricinus communis]
5 Hb_002477_230 0.1143011034 - - PREDICTED: verprolin [Jatropha curcas]
6 Hb_001454_390 0.1171667496 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
7 Hb_000500_310 0.1197769652 - - -
8 Hb_000352_150 0.1265089015 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
9 Hb_002875_090 0.1285364245 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000590_090 0.1349396529 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
11 Hb_004738_090 0.1366950192 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001980_020 0.1372221137 - - -
13 Hb_000038_130 0.1393093956 - - -
14 Hb_170116_010 0.1407541324 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
15 Hb_003636_090 0.1457674905 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
16 Hb_000680_150 0.1466596261 - - PREDICTED: protein STU1-like [Jatropha curcas]
17 Hb_000117_040 0.1475481777 - - 30S ribosomal protein S6A [Hevea brasiliensis]
18 Hb_001780_060 0.1489532605 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
19 Hb_178968_150 0.1505028381 - - zinc finger protein, putative [Ricinus communis]
20 Hb_030620_010 0.1516115467 - - -

Gene co-expression network

sample Hb_003253_010 Hb_003253_010 Hb_010098_080 Hb_010098_080 Hb_003253_010--Hb_010098_080 Hb_003777_070 Hb_003777_070 Hb_003253_010--Hb_003777_070 Hb_007810_050 Hb_007810_050 Hb_003253_010--Hb_007810_050 Hb_002477_230 Hb_002477_230 Hb_003253_010--Hb_002477_230 Hb_001454_390 Hb_001454_390 Hb_003253_010--Hb_001454_390 Hb_000500_310 Hb_000500_310 Hb_003253_010--Hb_000500_310 Hb_010098_080--Hb_000500_310 Hb_010098_080--Hb_003777_070 Hb_003018_180 Hb_003018_180 Hb_010098_080--Hb_003018_180 Hb_002298_040 Hb_002298_040 Hb_010098_080--Hb_002298_040 Hb_002609_260 Hb_002609_260 Hb_010098_080--Hb_002609_260 Hb_001980_020 Hb_001980_020 Hb_003777_070--Hb_001980_020 Hb_000038_130 Hb_000038_130 Hb_003777_070--Hb_000038_130 Hb_000352_150 Hb_000352_150 Hb_003777_070--Hb_000352_150 Hb_003777_070--Hb_007810_050 Hb_007810_050--Hb_002477_230 Hb_007810_050--Hb_010098_080 Hb_007810_050--Hb_001980_020 Hb_175445_010 Hb_175445_010 Hb_007810_050--Hb_175445_010 Hb_007849_030 Hb_007849_030 Hb_002477_230--Hb_007849_030 Hb_002388_060 Hb_002388_060 Hb_002477_230--Hb_002388_060 Hb_002477_230--Hb_175445_010 Hb_002477_230--Hb_010098_080 Hb_001780_060 Hb_001780_060 Hb_001454_390--Hb_001780_060 Hb_000590_090 Hb_000590_090 Hb_001454_390--Hb_000590_090 Hb_170116_010 Hb_170116_010 Hb_001454_390--Hb_170116_010 Hb_002875_090 Hb_002875_090 Hb_001454_390--Hb_002875_090 Hb_001454_390--Hb_000038_130 Hb_004738_090 Hb_004738_090 Hb_000500_310--Hb_004738_090 Hb_001140_160 Hb_001140_160 Hb_000500_310--Hb_001140_160 Hb_000500_310--Hb_001780_060 Hb_004545_150 Hb_004545_150 Hb_000500_310--Hb_004545_150 Hb_000500_310--Hb_002609_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
220.263 5.79494 5.15289 3.65499 104.668 72.7902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.0677 101.592 60.0428 8.62336 1.32254

CAGE analysis