Hb_003253_030

Information

Type -
Description -
Location Contig3253: 29439-35125
Sequence    

Annotation

kegg
ID rcu:RCOM_1258640
description lysosomal pro-X carboxypeptidase, putative (EC:3.4.16.2)
nr
ID XP_002530520.1
description lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
swissprot
ID Q2TA14
description Lysosomal Pro-X carboxypeptidase OS=Bos taurus GN=PRCP PE=2 SV=1
trembl
ID B9SX01
description Lysosomal pro-X carboxypeptidase, putative OS=Ricinus communis GN=RCOM_1258640 PE=4 SV=1
Gene Ontology
ID GO:0004180
description lysosomal pro-x carboxypeptidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34274: 29340-29719 , PASA_asmbl_34275: 31155-32676 , PASA_asmbl_34276: 33910-34787 , PASA_asmbl_34277: 34931-35063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003253_030 0.0 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
2 Hb_000844_060 0.0671950431 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
3 Hb_004329_030 0.0889683624 - - hypothetical protein JCGZ_17335 [Jatropha curcas]
4 Hb_003622_050 0.0935531694 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
5 Hb_001085_200 0.0940010839 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
6 Hb_002081_140 0.0951029993 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002600_110 0.1040388385 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
8 Hb_001051_020 0.1091117754 - - hypothetical protein L484_008044 [Morus notabilis]
9 Hb_001053_050 0.1109979143 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
10 Hb_002188_150 0.1124834031 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000920_340 0.1143131723 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_169492_010 0.1163026035 - - PREDICTED: expansin-like B1 [Jatropha curcas]
13 Hb_002445_020 0.1174360576 - - -
14 Hb_012049_010 0.1177806116 - - hypothetical protein B456_002G055100 [Gossypium raimondii]
15 Hb_001999_330 0.119579518 - - hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]
16 Hb_000645_270 0.120998355 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
17 Hb_000768_080 0.1234314724 - - Mlo protein [Hevea brasiliensis]
18 Hb_001146_030 0.1244309633 - - cytochrome P450, putative [Ricinus communis]
19 Hb_005092_070 0.1250413475 - - Oligopeptide transporter, putative [Ricinus communis]
20 Hb_004113_030 0.1253821148 - - -

Gene co-expression network

sample Hb_003253_030 Hb_003253_030 Hb_000844_060 Hb_000844_060 Hb_003253_030--Hb_000844_060 Hb_004329_030 Hb_004329_030 Hb_003253_030--Hb_004329_030 Hb_003622_050 Hb_003622_050 Hb_003253_030--Hb_003622_050 Hb_001085_200 Hb_001085_200 Hb_003253_030--Hb_001085_200 Hb_002081_140 Hb_002081_140 Hb_003253_030--Hb_002081_140 Hb_002600_110 Hb_002600_110 Hb_003253_030--Hb_002600_110 Hb_000844_060--Hb_003622_050 Hb_000645_270 Hb_000645_270 Hb_000844_060--Hb_000645_270 Hb_001999_330 Hb_001999_330 Hb_000844_060--Hb_001999_330 Hb_031194_020 Hb_031194_020 Hb_000844_060--Hb_031194_020 Hb_000844_060--Hb_002600_110 Hb_001051_020 Hb_001051_020 Hb_004329_030--Hb_001051_020 Hb_034299_010 Hb_034299_010 Hb_004329_030--Hb_034299_010 Hb_004329_030--Hb_002081_140 Hb_002960_180 Hb_002960_180 Hb_004329_030--Hb_002960_180 Hb_094074_010 Hb_094074_010 Hb_004329_030--Hb_094074_010 Hb_002929_040 Hb_002929_040 Hb_004329_030--Hb_002929_040 Hb_003622_050--Hb_000645_270 Hb_003622_050--Hb_031194_020 Hb_001080_290 Hb_001080_290 Hb_003622_050--Hb_001080_290 Hb_003622_050--Hb_002600_110 Hb_002188_150 Hb_002188_150 Hb_003622_050--Hb_002188_150 Hb_068804_110 Hb_068804_110 Hb_001085_200--Hb_068804_110 Hb_001146_030 Hb_001146_030 Hb_001085_200--Hb_001146_030 Hb_001085_200--Hb_003622_050 Hb_001085_200--Hb_002188_150 Hb_054865_040 Hb_054865_040 Hb_001085_200--Hb_054865_040 Hb_002081_140--Hb_001051_020 Hb_000997_370 Hb_000997_370 Hb_002081_140--Hb_000997_370 Hb_002675_220 Hb_002675_220 Hb_002081_140--Hb_002675_220 Hb_002081_140--Hb_034299_010 Hb_183479_030 Hb_183479_030 Hb_002600_110--Hb_183479_030 Hb_000768_080 Hb_000768_080 Hb_002600_110--Hb_000768_080 Hb_048694_010 Hb_048694_010 Hb_002600_110--Hb_048694_010 Hb_001775_010 Hb_001775_010 Hb_002600_110--Hb_001775_010 Hb_002600_110--Hb_001080_290 Hb_002445_020 Hb_002445_020 Hb_002600_110--Hb_002445_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0134023 0.148819 0.548859 2.68965 0.0251022 0.0117506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.024016 0 0.345012 12.8224

CAGE analysis