Hb_003253_040

Information

Type -
Description -
Location Contig3253: 40135-43867
Sequence    

Annotation

kegg
ID rcu:RCOM_1258630
description hypothetical protein
nr
ID XP_012074388.1
description PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
swissprot
ID Q66GQ2
description Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=2 SV=2
trembl
ID A0A067KWH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08823 PE=4 SV=1
Gene Ontology
ID GO:0005886
description plant f24k9-26 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34278: 40127-40340 , PASA_asmbl_34279: 40608-43915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003253_040 0.0 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
2 Hb_002740_110 0.0428467865 - - PREDICTED: phytochrome A [Jatropha curcas]
3 Hb_010174_110 0.0481415559 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
4 Hb_001199_100 0.0520238056 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
5 Hb_002942_100 0.0588378965 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
6 Hb_002063_020 0.0653817639 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
7 Hb_004143_130 0.0668137867 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
8 Hb_001341_170 0.0669741724 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
9 Hb_123903_010 0.0683658142 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
10 Hb_009545_100 0.0690502846 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
11 Hb_012022_090 0.0691109946 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
12 Hb_000028_280 0.0695173131 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
13 Hb_003294_090 0.0697441689 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005901_020 0.0712078377 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
15 Hb_000592_030 0.0729725992 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
16 Hb_000107_490 0.0733697637 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
17 Hb_001550_060 0.0734549948 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
18 Hb_004032_380 0.0740458761 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
19 Hb_000343_120 0.0743004639 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
20 Hb_000890_210 0.074667248 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_003253_040 Hb_003253_040 Hb_002740_110 Hb_002740_110 Hb_003253_040--Hb_002740_110 Hb_010174_110 Hb_010174_110 Hb_003253_040--Hb_010174_110 Hb_001199_100 Hb_001199_100 Hb_003253_040--Hb_001199_100 Hb_002942_100 Hb_002942_100 Hb_003253_040--Hb_002942_100 Hb_002063_020 Hb_002063_020 Hb_003253_040--Hb_002063_020 Hb_004143_130 Hb_004143_130 Hb_003253_040--Hb_004143_130 Hb_002740_110--Hb_010174_110 Hb_000028_280 Hb_000028_280 Hb_002740_110--Hb_000028_280 Hb_004994_220 Hb_004994_220 Hb_002740_110--Hb_004994_220 Hb_004032_380 Hb_004032_380 Hb_002740_110--Hb_004032_380 Hb_002740_110--Hb_004143_130 Hb_000002_010 Hb_000002_010 Hb_010174_110--Hb_000002_010 Hb_000107_490 Hb_000107_490 Hb_010174_110--Hb_000107_490 Hb_010174_110--Hb_004143_130 Hb_010174_110--Hb_004994_220 Hb_000343_120 Hb_000343_120 Hb_001199_100--Hb_000343_120 Hb_000166_130 Hb_000166_130 Hb_001199_100--Hb_000166_130 Hb_000613_050 Hb_000613_050 Hb_001199_100--Hb_000613_050 Hb_009545_100 Hb_009545_100 Hb_001199_100--Hb_009545_100 Hb_172632_080 Hb_172632_080 Hb_001199_100--Hb_172632_080 Hb_002311_040 Hb_002311_040 Hb_002942_100--Hb_002311_040 Hb_006915_030 Hb_006915_030 Hb_002942_100--Hb_006915_030 Hb_002942_100--Hb_004143_130 Hb_012022_090 Hb_012022_090 Hb_002942_100--Hb_012022_090 Hb_001341_170 Hb_001341_170 Hb_002942_100--Hb_001341_170 Hb_000388_090 Hb_000388_090 Hb_002063_020--Hb_000388_090 Hb_000366_040 Hb_000366_040 Hb_002063_020--Hb_000366_040 Hb_002099_080 Hb_002099_080 Hb_002063_020--Hb_002099_080 Hb_002063_020--Hb_002942_100 Hb_000352_190 Hb_000352_190 Hb_002063_020--Hb_000352_190 Hb_004143_130--Hb_000028_280 Hb_004143_130--Hb_004032_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.07461 9.17007 4.17812 7.38016 10.5262 11.1236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.75001 6.23432 11.9799 11.969 9.9072

CAGE analysis