Hb_003266_020

Information

Type -
Description -
Location Contig3266: 21186-25867
Sequence    

Annotation

kegg
ID rcu:RCOM_0558690
description hypothetical protein
nr
ID XP_012092264.1
description PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
swissprot
ID Q5BPJ0
description Protein trichome birefringence-like 11 OS=Arabidopsis thaliana GN=TBL11 PE=2 SV=1
trembl
ID A0A067JN79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21946 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34344: 22844-23087 , PASA_asmbl_34346: 23370-23728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003266_020 0.0 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
2 Hb_002968_070 0.0993292104 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
3 Hb_005883_110 0.1005664712 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
4 Hb_001953_120 0.1108844466 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
5 Hb_012940_040 0.1116056501 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
6 Hb_015183_100 0.1191371946 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
7 Hb_088144_020 0.1202867641 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
8 Hb_001171_030 0.1219210088 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
9 Hb_000559_070 0.1224794335 - - calcineurin B, putative [Ricinus communis]
10 Hb_003142_040 0.1227249251 - - Sf3a3 [Gossypium arboreum]
11 Hb_001999_140 0.1234083798 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_000103_570 0.1250266993 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
13 Hb_000359_130 0.1259505588 - - 4-hydroxyphenylpyruvate dioxygenase [Hevea brasiliensis]
14 Hb_001369_230 0.1264881378 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
15 Hb_002016_090 0.1287228915 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
16 Hb_001427_150 0.1300374485 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
17 Hb_006478_030 0.1300773859 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
18 Hb_000318_150 0.1303746022 - - RNA-binding protein Nova-1, putative [Ricinus communis]
19 Hb_001221_180 0.1304652516 - - calcineurin-like phosphoesterase [Manihot esculenta]
20 Hb_000645_130 0.1308300917 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_003266_020 Hb_003266_020 Hb_002968_070 Hb_002968_070 Hb_003266_020--Hb_002968_070 Hb_005883_110 Hb_005883_110 Hb_003266_020--Hb_005883_110 Hb_001953_120 Hb_001953_120 Hb_003266_020--Hb_001953_120 Hb_012940_040 Hb_012940_040 Hb_003266_020--Hb_012940_040 Hb_015183_100 Hb_015183_100 Hb_003266_020--Hb_015183_100 Hb_088144_020 Hb_088144_020 Hb_003266_020--Hb_088144_020 Hb_003142_040 Hb_003142_040 Hb_002968_070--Hb_003142_040 Hb_001171_030 Hb_001171_030 Hb_002968_070--Hb_001171_030 Hb_002968_070--Hb_001953_120 Hb_002016_090 Hb_002016_090 Hb_002968_070--Hb_002016_090 Hb_000373_170 Hb_000373_170 Hb_002968_070--Hb_000373_170 Hb_000996_020 Hb_000996_020 Hb_002968_070--Hb_000996_020 Hb_000109_260 Hb_000109_260 Hb_005883_110--Hb_000109_260 Hb_000976_110 Hb_000976_110 Hb_005883_110--Hb_000976_110 Hb_000318_150 Hb_000318_150 Hb_005883_110--Hb_000318_150 Hb_003490_060 Hb_003490_060 Hb_005883_110--Hb_003490_060 Hb_027402_130 Hb_027402_130 Hb_005883_110--Hb_027402_130 Hb_001953_120--Hb_003142_040 Hb_004223_160 Hb_004223_160 Hb_001953_120--Hb_004223_160 Hb_001953_120--Hb_088144_020 Hb_005832_010 Hb_005832_010 Hb_001953_120--Hb_005832_010 Hb_000934_210 Hb_000934_210 Hb_001953_120--Hb_000934_210 Hb_012940_040--Hb_002968_070 Hb_012940_040--Hb_002016_090 Hb_000260_770 Hb_000260_770 Hb_012940_040--Hb_000260_770 Hb_012940_040--Hb_001171_030 Hb_012940_040--Hb_015183_100 Hb_000174_150 Hb_000174_150 Hb_012940_040--Hb_000174_150 Hb_015183_100--Hb_003142_040 Hb_015183_100--Hb_001171_030 Hb_011249_060 Hb_011249_060 Hb_015183_100--Hb_011249_060 Hb_015183_100--Hb_002968_070 Hb_001341_160 Hb_001341_160 Hb_015183_100--Hb_001341_160 Hb_088144_020--Hb_003142_040 Hb_088144_020--Hb_002968_070 Hb_000823_030 Hb_000823_030 Hb_088144_020--Hb_000823_030 Hb_001221_180 Hb_001221_180 Hb_088144_020--Hb_001221_180 Hb_088144_020--Hb_001171_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.57789 3.96988 3.81192 1.45345 1.06992 1.72635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18636 0.585198 1.06244 4.29364 3.22809

CAGE analysis