Hb_003266_050

Information

Type -
Description -
Location Contig3266: 34920-39015
Sequence    

Annotation

kegg
ID atr:s00061p00127560
description AMTR_s00061p00127560; hypothetical protein
nr
ID XP_006857628.1
description PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
swissprot
ID Q9VU02
description Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster GN=SmD1 PE=1 SV=1
trembl
ID U5DA74
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00061p00127560 PE=4 SV=1
Gene Ontology
ID GO:0019013
description small nuclear ribonucleoprotein sm d1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34348: 34846-39030
cDNA
(Sanger)
(ID:Location)		 005_O04.ab1: 34955-39011 , 037_G13.ab1: 34957-39011

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003266_050 0.0 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
2 Hb_005389_150 0.0688844397 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000815_040 0.0693814928 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
4 Hb_010691_060 0.072668952 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
5 Hb_001278_110 0.0783469599 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
6 Hb_002890_140 0.078402684 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
7 Hb_003058_130 0.079533206 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
8 Hb_001269_320 0.0812980933 - - 40S ribosomal protein S12A [Hevea brasiliensis]
9 Hb_003874_020 0.0851896083 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
10 Hb_000157_030 0.0870962848 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
11 Hb_004297_070 0.0874884527 - - hypothetical protein POPTR_0009s14820g [Populus trichocarpa]
12 Hb_001604_080 0.0893388647 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
13 Hb_004724_100 0.0906005124 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
14 Hb_003392_040 0.0920713475 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
15 Hb_010180_010 0.0925521332 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
16 Hb_004440_050 0.0932629929 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
17 Hb_000163_160 0.0933363612 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
18 Hb_000054_100 0.0933544262 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
19 Hb_032717_080 0.0934648033 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
20 Hb_000169_010 0.0937383104 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003266_050 Hb_003266_050 Hb_005389_150 Hb_005389_150 Hb_003266_050--Hb_005389_150 Hb_000815_040 Hb_000815_040 Hb_003266_050--Hb_000815_040 Hb_010691_060 Hb_010691_060 Hb_003266_050--Hb_010691_060 Hb_001278_110 Hb_001278_110 Hb_003266_050--Hb_001278_110 Hb_002890_140 Hb_002890_140 Hb_003266_050--Hb_002890_140 Hb_003058_130 Hb_003058_130 Hb_003266_050--Hb_003058_130 Hb_001009_040 Hb_001009_040 Hb_005389_150--Hb_001009_040 Hb_000169_010 Hb_000169_010 Hb_005389_150--Hb_000169_010 Hb_003011_040 Hb_003011_040 Hb_005389_150--Hb_003011_040 Hb_001269_320 Hb_001269_320 Hb_005389_150--Hb_001269_320 Hb_005389_150--Hb_010691_060 Hb_001604_080 Hb_001604_080 Hb_000815_040--Hb_001604_080 Hb_000815_040--Hb_002890_140 Hb_000103_560 Hb_000103_560 Hb_000815_040--Hb_000103_560 Hb_002214_040 Hb_002214_040 Hb_000815_040--Hb_002214_040 Hb_000529_190 Hb_000529_190 Hb_000815_040--Hb_000529_190 Hb_118707_030 Hb_118707_030 Hb_000815_040--Hb_118707_030 Hb_001766_150 Hb_001766_150 Hb_010691_060--Hb_001766_150 Hb_000157_030 Hb_000157_030 Hb_010691_060--Hb_000157_030 Hb_185830_020 Hb_185830_020 Hb_010691_060--Hb_185830_020 Hb_002391_300 Hb_002391_300 Hb_010691_060--Hb_002391_300 Hb_010691_060--Hb_003058_130 Hb_002685_190 Hb_002685_190 Hb_001278_110--Hb_002685_190 Hb_004297_070 Hb_004297_070 Hb_001278_110--Hb_004297_070 Hb_002284_090 Hb_002284_090 Hb_001278_110--Hb_002284_090 Hb_181288_010 Hb_181288_010 Hb_001278_110--Hb_181288_010 Hb_000300_610 Hb_000300_610 Hb_001278_110--Hb_000300_610 Hb_000103_090 Hb_000103_090 Hb_002890_140--Hb_000103_090 Hb_002890_140--Hb_000103_560 Hb_002890_140--Hb_000529_190 Hb_033834_040 Hb_033834_040 Hb_002890_140--Hb_033834_040 Hb_000832_140 Hb_000832_140 Hb_002890_140--Hb_000832_140 Hb_003392_040 Hb_003392_040 Hb_003058_130--Hb_003392_040 Hb_011689_080 Hb_011689_080 Hb_003058_130--Hb_011689_080 Hb_033843_010 Hb_033843_010 Hb_003058_130--Hb_033843_010 Hb_003058_130--Hb_000103_560 Hb_002078_150 Hb_002078_150 Hb_003058_130--Hb_002078_150 Hb_039837_010 Hb_039837_010 Hb_003058_130--Hb_039837_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
123.978 35.1561 59.6389 59.0575 93.8198 191.713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
174.18 166.917 67.8397 84.1604 38.7367

CAGE analysis