Hb_003266_070

Information

Type -
Description -
Location Contig3266: 43980-44741
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID K7L3V6
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003266_070 0.0 - - -
2 Hb_003643_030 0.1449897091 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Populus euphratica]
3 Hb_000087_090 0.1729637327 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
4 Hb_001754_160 0.1863779884 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
5 Hb_001143_150 0.1927586327 - - PREDICTED: mitochondrial protein import protein MAS5-like [Populus euphratica]
6 Hb_011099_010 0.2472600609 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_160246_010 0.2547392528 - - calcium ion binding protein, putative [Ricinus communis]
8 Hb_003095_080 0.267312419 - - -
9 Hb_112440_010 0.2729202071 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
10 Hb_008054_060 0.2809206041 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
11 Hb_004242_210 0.2870756724 - - PREDICTED: uncharacterized protein LOC105633248 [Jatropha curcas]
12 Hb_185111_010 0.2927998421 - - -
13 Hb_000112_100 0.2934734609 - - glutamate receptor 2 plant, putative [Ricinus communis]
14 Hb_000718_050 0.2937531537 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
15 Hb_002338_030 0.294453427 - - PREDICTED: 60S acidic ribosomal protein P1-like [Tarenaya hassleriana]
16 Hb_000116_200 0.298956961 transcription factor TF Family: HMG hypothetical protein POPTR_0005s10440g [Populus trichocarpa]
17 Hb_004267_030 0.2995193093 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000896_070 0.3083846712 - - ammonium transporter, putative [Ricinus communis]
19 Hb_016875_010 0.3106990621 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_001946_020 0.3115685206 - - hypothetical protein RCOM_0224470 [Ricinus communis]

Gene co-expression network

sample Hb_003266_070 Hb_003266_070 Hb_003643_030 Hb_003643_030 Hb_003266_070--Hb_003643_030 Hb_000087_090 Hb_000087_090 Hb_003266_070--Hb_000087_090 Hb_001754_160 Hb_001754_160 Hb_003266_070--Hb_001754_160 Hb_001143_150 Hb_001143_150 Hb_003266_070--Hb_001143_150 Hb_011099_010 Hb_011099_010 Hb_003266_070--Hb_011099_010 Hb_160246_010 Hb_160246_010 Hb_003266_070--Hb_160246_010 Hb_003643_030--Hb_001754_160 Hb_001195_210 Hb_001195_210 Hb_003643_030--Hb_001195_210 Hb_000116_200 Hb_000116_200 Hb_003643_030--Hb_000116_200 Hb_003643_030--Hb_001143_150 Hb_003643_030--Hb_160246_010 Hb_185111_010 Hb_185111_010 Hb_000087_090--Hb_185111_010 Hb_000318_090 Hb_000318_090 Hb_000087_090--Hb_000318_090 Hb_000892_020 Hb_000892_020 Hb_000087_090--Hb_000892_020 Hb_000718_050 Hb_000718_050 Hb_000087_090--Hb_000718_050 Hb_001729_040 Hb_001729_040 Hb_000087_090--Hb_001729_040 Hb_000896_070 Hb_000896_070 Hb_001754_160--Hb_000896_070 Hb_001754_160--Hb_000116_200 Hb_001754_160--Hb_011099_010 Hb_001754_160--Hb_001195_210 Hb_001143_150--Hb_160246_010 Hb_000175_150 Hb_000175_150 Hb_001143_150--Hb_000175_150 Hb_034904_010 Hb_034904_010 Hb_001143_150--Hb_034904_010 Hb_000740_020 Hb_000740_020 Hb_001143_150--Hb_000740_020 Hb_005965_020 Hb_005965_020 Hb_011099_010--Hb_005965_020 Hb_002936_020 Hb_002936_020 Hb_011099_010--Hb_002936_020 Hb_000031_330 Hb_000031_330 Hb_011099_010--Hb_000031_330 Hb_002289_140 Hb_002289_140 Hb_011099_010--Hb_002289_140 Hb_160246_010--Hb_000175_150 Hb_000112_100 Hb_000112_100 Hb_160246_010--Hb_000112_100 Hb_006655_040 Hb_006655_040 Hb_160246_010--Hb_006655_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0451341 0.139014 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.101125 0 0.0838838 0

CAGE analysis