Hb_003266_100

Information

Type -
Description -
Location Contig3266: 51873-62435
Sequence    

Annotation

kegg
ID rcu:RCOM_0558860
description phenazine biosynthesis protein, putative
nr
ID KHF99237.1
description Isomerase protein [Gossypium arboreum]
swissprot
ID Q9KG32
description Uncharacterized isomerase BH0283 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH0283 PE=3 SV=1
trembl
ID A0A0B0MAS7
description Isomerase protein OS=Gossypium arboreum GN=F383_17373 PE=4 SV=1
Gene Ontology
ID GO:0003676
description phenazine biosynthesis

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34351: 49995-52199 , PASA_asmbl_34352: 53460-53951 , PASA_asmbl_34353: 54145-54398 , PASA_asmbl_34354: 55105-57334 , PASA_asmbl_34355: 58702-60973 , PASA_asmbl_34356: 60002-60237 , PASA_asmbl_34357: 61215-61778
cDNA
(Sanger)
(ID:Location)		 013_C13.ab1: 56033-57288 , 053_O05.ab1: 56027-57288

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003266_100 0.0 - - Isomerase protein [Gossypium arboreum]
2 Hb_004064_010 0.0620257892 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
3 Hb_000621_020 0.1018229834 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
4 Hb_016522_010 0.1041124602 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
5 Hb_000483_260 0.1042404335 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
6 Hb_109002_020 0.1074521725 - - PREDICTED: CTP synthase-like [Jatropha curcas]
7 Hb_000665_050 0.108751308 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
8 Hb_001332_040 0.109011945 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
9 Hb_009687_010 0.1097567026 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]
10 Hb_001214_090 0.1108020237 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
11 Hb_002849_200 0.1147604549 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
12 Hb_000210_120 0.1153408442 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
13 Hb_001341_100 0.1167964743 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
14 Hb_000329_760 0.1169366444 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
15 Hb_105602_010 0.1173917535 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
16 Hb_000853_150 0.1176772099 - - Fumarase 1 isoform 2 [Theobroma cacao]
17 Hb_010422_010 0.1178863311 - - phosphofructokinase [Hevea brasiliensis]
18 Hb_002889_030 0.1179387314 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
19 Hb_003994_260 0.1189596542 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
20 Hb_000312_080 0.1189721171 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]

Gene co-expression network

sample Hb_003266_100 Hb_003266_100 Hb_004064_010 Hb_004064_010 Hb_003266_100--Hb_004064_010 Hb_000621_020 Hb_000621_020 Hb_003266_100--Hb_000621_020 Hb_016522_010 Hb_016522_010 Hb_003266_100--Hb_016522_010 Hb_000483_260 Hb_000483_260 Hb_003266_100--Hb_000483_260 Hb_109002_020 Hb_109002_020 Hb_003266_100--Hb_109002_020 Hb_000665_050 Hb_000665_050 Hb_003266_100--Hb_000665_050 Hb_105602_010 Hb_105602_010 Hb_004064_010--Hb_105602_010 Hb_004064_010--Hb_000621_020 Hb_004064_010--Hb_109002_020 Hb_001341_100 Hb_001341_100 Hb_004064_010--Hb_001341_100 Hb_001486_030 Hb_001486_030 Hb_004064_010--Hb_001486_030 Hb_000621_020--Hb_105602_010 Hb_000621_020--Hb_109002_020 Hb_004079_080 Hb_004079_080 Hb_000621_020--Hb_004079_080 Hb_000103_270 Hb_000103_270 Hb_000621_020--Hb_000103_270 Hb_000227_070 Hb_000227_070 Hb_016522_010--Hb_000227_070 Hb_001414_030 Hb_001414_030 Hb_016522_010--Hb_001414_030 Hb_001214_090 Hb_001214_090 Hb_016522_010--Hb_001214_090 Hb_000510_240 Hb_000510_240 Hb_016522_010--Hb_000510_240 Hb_000228_110 Hb_000228_110 Hb_016522_010--Hb_000228_110 Hb_000210_120 Hb_000210_120 Hb_016522_010--Hb_000210_120 Hb_000460_030 Hb_000460_030 Hb_000483_260--Hb_000460_030 Hb_003994_260 Hb_003994_260 Hb_000483_260--Hb_003994_260 Hb_000787_020 Hb_000787_020 Hb_000483_260--Hb_000787_020 Hb_001218_030 Hb_001218_030 Hb_000483_260--Hb_001218_030 Hb_005306_180 Hb_005306_180 Hb_000483_260--Hb_005306_180 Hb_001314_070 Hb_001314_070 Hb_000483_260--Hb_001314_070 Hb_000175_540 Hb_000175_540 Hb_109002_020--Hb_000175_540 Hb_000504_070 Hb_000504_070 Hb_109002_020--Hb_000504_070 Hb_109002_020--Hb_000103_270 Hb_000665_050--Hb_005306_180 Hb_000665_050--Hb_001218_030 Hb_000414_130 Hb_000414_130 Hb_000665_050--Hb_000414_130 Hb_001301_110 Hb_001301_110 Hb_000665_050--Hb_001301_110 Hb_000665_050--Hb_000460_030 Hb_000853_150 Hb_000853_150 Hb_000665_050--Hb_000853_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.32675 8.92324 10.1655 11.3771 6.06767 5.64776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1282 15.9277 13.9708 26.0751 6.22505

CAGE analysis