Hb_003266_130

Information

Type -
Description -
Location Contig3266: 74451-75683
Sequence    

Annotation

kegg
ID pop:POPTR_0002s22540g
description POPTRDRAFT_411680; hypothetical protein
nr
ID XP_012092282.1
description PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
swissprot
ID Q689D6
description Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1
trembl
ID B9GTD3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s22540g PE=4 SV=2
Gene Ontology
ID GO:0016787
description protein root primordium defective 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003266_130 0.0 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
2 Hb_178968_110 0.0626960923 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
3 Hb_000614_230 0.0654699577 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
4 Hb_006816_140 0.0732373853 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
5 Hb_005488_010 0.0739146197 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001158_140 0.0772163294 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
7 Hb_010172_050 0.0785222432 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
8 Hb_000022_250 0.0797892219 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
9 Hb_055062_030 0.081850955 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
10 Hb_000193_290 0.0826543423 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
11 Hb_006922_110 0.0829171274 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
12 Hb_006541_030 0.0836212728 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
13 Hb_005532_060 0.0836639971 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
14 Hb_008695_210 0.0854536572 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
15 Hb_016065_010 0.0856061765 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
16 Hb_008453_090 0.085743598 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
17 Hb_171900_080 0.0873148123 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
18 Hb_016901_010 0.0877068785 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
19 Hb_005289_030 0.0879653072 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
20 Hb_004993_050 0.088001987 - - -

Gene co-expression network

sample Hb_003266_130 Hb_003266_130 Hb_178968_110 Hb_178968_110 Hb_003266_130--Hb_178968_110 Hb_000614_230 Hb_000614_230 Hb_003266_130--Hb_000614_230 Hb_006816_140 Hb_006816_140 Hb_003266_130--Hb_006816_140 Hb_005488_010 Hb_005488_010 Hb_003266_130--Hb_005488_010 Hb_001158_140 Hb_001158_140 Hb_003266_130--Hb_001158_140 Hb_010172_050 Hb_010172_050 Hb_003266_130--Hb_010172_050 Hb_005532_060 Hb_005532_060 Hb_178968_110--Hb_005532_060 Hb_000457_150 Hb_000457_150 Hb_178968_110--Hb_000457_150 Hb_000179_210 Hb_000179_210 Hb_178968_110--Hb_000179_210 Hb_178968_110--Hb_000614_230 Hb_178968_110--Hb_010172_050 Hb_008695_210 Hb_008695_210 Hb_000614_230--Hb_008695_210 Hb_000567_260 Hb_000567_260 Hb_000614_230--Hb_000567_260 Hb_001329_300 Hb_001329_300 Hb_000614_230--Hb_001329_300 Hb_002006_090 Hb_002006_090 Hb_000614_230--Hb_002006_090 Hb_001085_170 Hb_001085_170 Hb_000614_230--Hb_001085_170 Hb_006816_140--Hb_001158_140 Hb_000200_050 Hb_000200_050 Hb_006816_140--Hb_000200_050 Hb_016901_010 Hb_016901_010 Hb_006816_140--Hb_016901_010 Hb_000997_400 Hb_000997_400 Hb_006816_140--Hb_000997_400 Hb_006816_140--Hb_000614_230 Hb_016065_010 Hb_016065_010 Hb_005488_010--Hb_016065_010 Hb_004899_320 Hb_004899_320 Hb_005488_010--Hb_004899_320 Hb_055062_030 Hb_055062_030 Hb_005488_010--Hb_055062_030 Hb_000205_270 Hb_000205_270 Hb_005488_010--Hb_000205_270 Hb_000836_070 Hb_000836_070 Hb_005488_010--Hb_000836_070 Hb_008289_060 Hb_008289_060 Hb_005488_010--Hb_008289_060 Hb_001158_140--Hb_000200_050 Hb_001158_140--Hb_005488_010 Hb_004993_050 Hb_004993_050 Hb_001158_140--Hb_004993_050 Hb_003018_190 Hb_003018_190 Hb_001158_140--Hb_003018_190 Hb_010172_050--Hb_016901_010 Hb_000022_250 Hb_000022_250 Hb_010172_050--Hb_000022_250 Hb_002518_140 Hb_002518_140 Hb_010172_050--Hb_002518_140 Hb_000063_140 Hb_000063_140 Hb_010172_050--Hb_000063_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.90153 2.9513 1.34091 2.68311 5.08222 7.39818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.40232 9.70176 11.281 2.9443 3.20195

CAGE analysis