Hb_003271_040

Information

Type -
Description -
Location Contig3271: 70432-76241
Sequence    

Annotation

kegg
ID rcu:RCOM_1146630
description SEC14 cytosolic factor, putative
nr
ID XP_012074810.1
description PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
swissprot
ID F4J7S8
description Phosphatidylinositol/phosphatidylcholine transfer protein SFH9 OS=Arabidopsis thaliana GN=SFH9 PE=2 SV=1
trembl
ID B9SWQ7
description SEC14 cytosolic factor, putative OS=Ricinus communis GN=RCOM_1146630 PE=4 SV=1
Gene Ontology
ID GO:0005622
description sec14 cytosolic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34420: 70630-86125
cDNA
(Sanger)
(ID:Location)		 040_A01.ab1: 71588-86017 , 051_A08.ab1: 72017-86017

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003271_040 0.0 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
2 Hb_013405_070 0.1106943761 - - ferric-chelate reductase, putative [Ricinus communis]
3 Hb_011671_340 0.1149246661 - - small GTPase [Hevea brasiliensis]
4 Hb_000800_020 0.1328187965 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
5 Hb_003835_110 0.1358443762 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
6 Hb_002205_140 0.1374878514 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
7 Hb_019654_050 0.1408540924 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
8 Hb_011381_040 0.1456587984 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
9 Hb_006951_030 0.1515131529 - - PREDICTED: protein MCM10 homolog [Jatropha curcas]
10 Hb_006588_190 0.1589782395 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
11 Hb_001232_090 0.1611397264 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
12 Hb_002627_040 0.161762098 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
13 Hb_000235_070 0.1618025748 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
14 Hb_005511_130 0.1620501322 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
15 Hb_001188_100 0.1642783112 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
16 Hb_002871_040 0.164568119 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
17 Hb_007426_220 0.1655644884 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
18 Hb_008725_270 0.1657764692 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
19 Hb_001155_050 0.1657843726 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
20 Hb_001799_160 0.165815742 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003271_040 Hb_003271_040 Hb_013405_070 Hb_013405_070 Hb_003271_040--Hb_013405_070 Hb_011671_340 Hb_011671_340 Hb_003271_040--Hb_011671_340 Hb_000800_020 Hb_000800_020 Hb_003271_040--Hb_000800_020 Hb_003835_110 Hb_003835_110 Hb_003271_040--Hb_003835_110 Hb_002205_140 Hb_002205_140 Hb_003271_040--Hb_002205_140 Hb_019654_050 Hb_019654_050 Hb_003271_040--Hb_019654_050 Hb_013405_070--Hb_000800_020 Hb_013405_070--Hb_011671_340 Hb_008725_270 Hb_008725_270 Hb_013405_070--Hb_008725_270 Hb_001232_090 Hb_001232_090 Hb_013405_070--Hb_001232_090 Hb_000589_170 Hb_000589_170 Hb_013405_070--Hb_000589_170 Hb_003894_030 Hb_003894_030 Hb_013405_070--Hb_003894_030 Hb_001155_050 Hb_001155_050 Hb_011671_340--Hb_001155_050 Hb_011671_340--Hb_000800_020 Hb_007426_220 Hb_007426_220 Hb_011671_340--Hb_007426_220 Hb_029253_010 Hb_029253_010 Hb_011671_340--Hb_029253_010 Hb_006588_190 Hb_006588_190 Hb_000800_020--Hb_006588_190 Hb_005511_130 Hb_005511_130 Hb_000800_020--Hb_005511_130 Hb_011381_040 Hb_011381_040 Hb_000800_020--Hb_011381_040 Hb_000984_220 Hb_000984_220 Hb_000800_020--Hb_000984_220 Hb_003835_110--Hb_011381_040 Hb_002871_040 Hb_002871_040 Hb_003835_110--Hb_002871_040 Hb_003835_110--Hb_019654_050 Hb_002027_320 Hb_002027_320 Hb_003835_110--Hb_002027_320 Hb_003835_110--Hb_006588_190 Hb_017193_010 Hb_017193_010 Hb_003835_110--Hb_017193_010 Hb_000676_020 Hb_000676_020 Hb_002205_140--Hb_000676_020 Hb_000364_170 Hb_000364_170 Hb_002205_140--Hb_000364_170 Hb_002205_140--Hb_019654_050 Hb_002205_140--Hb_011381_040 Hb_002205_140--Hb_013405_070 Hb_027506_040 Hb_027506_040 Hb_002205_140--Hb_027506_040 Hb_001799_160 Hb_001799_160 Hb_019654_050--Hb_001799_160 Hb_000120_890 Hb_000120_890 Hb_019654_050--Hb_000120_890 Hb_003498_100 Hb_003498_100 Hb_019654_050--Hb_003498_100 Hb_019654_050--Hb_011381_040 Hb_002783_220 Hb_002783_220 Hb_019654_050--Hb_002783_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.2724 11.8738 59.6838 37.2554 11.604 2.12539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.58236 16.6836 13.215 11.7607 24.8851

CAGE analysis