Hb_003286_020

Information

Type -
Description -
Location Contig3286: 13566-18055
Sequence    

Annotation

kegg
ID pop:POPTR_0007s05070g
description POPTRDRAFT_718708; hypothetical protein
nr
ID XP_002309963.2
description hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
swissprot
ID Q9FJN7
description LanC-like protein GCL1 OS=Arabidopsis thaliana GN=GCL1 PE=2 SV=1
trembl
ID B9HFD7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s05070g PE=4 SV=2
Gene Ontology
ID GO:0019898
description lanc-like protein gcl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34472: 13657-18075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003286_020 0.0 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
2 Hb_173281_010 0.1589256902 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
3 Hb_001780_070 0.1680808215 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
4 Hb_004800_020 0.1770697079 - - PREDICTED: TPR repeat-containing thioredoxin TTL4-like [Jatropha curcas]
5 Hb_000175_610 0.1875657303 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
6 Hb_000235_010 0.1911417279 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
7 Hb_000545_170 0.1918821118 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
8 Hb_003913_140 0.197438911 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
9 Hb_000742_270 0.2066117883 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
10 Hb_000614_100 0.21006068 - - 3-oxoacyl-[acyl-carrier-protein] reductase [Populus trichocarpa]
11 Hb_001741_040 0.2176676949 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
12 Hb_000157_040 0.2182440855 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
13 Hb_000749_240 0.2195103888 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005616_030 0.2195479158 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
15 Hb_088538_010 0.2203523175 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
16 Hb_048937_030 0.2231298631 - - hypothetical protein RCOM_0231790 [Ricinus communis]
17 Hb_000120_360 0.2293766449 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005000_160 0.2304007327 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
19 Hb_002450_070 0.2308732067 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
20 Hb_003371_100 0.2320053854 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003286_020 Hb_003286_020 Hb_173281_010 Hb_173281_010 Hb_003286_020--Hb_173281_010 Hb_001780_070 Hb_001780_070 Hb_003286_020--Hb_001780_070 Hb_004800_020 Hb_004800_020 Hb_003286_020--Hb_004800_020 Hb_000175_610 Hb_000175_610 Hb_003286_020--Hb_000175_610 Hb_000235_010 Hb_000235_010 Hb_003286_020--Hb_000235_010 Hb_000545_170 Hb_000545_170 Hb_003286_020--Hb_000545_170 Hb_003913_140 Hb_003913_140 Hb_173281_010--Hb_003913_140 Hb_000749_240 Hb_000749_240 Hb_173281_010--Hb_000749_240 Hb_001741_040 Hb_001741_040 Hb_173281_010--Hb_001741_040 Hb_003144_050 Hb_003144_050 Hb_173281_010--Hb_003144_050 Hb_001902_120 Hb_001902_120 Hb_173281_010--Hb_001902_120 Hb_001780_070--Hb_000175_610 Hb_005616_030 Hb_005616_030 Hb_001780_070--Hb_005616_030 Hb_001741_090 Hb_001741_090 Hb_001780_070--Hb_001741_090 Hb_075449_050 Hb_075449_050 Hb_001780_070--Hb_075449_050 Hb_000107_070 Hb_000107_070 Hb_001780_070--Hb_000107_070 Hb_004800_020--Hb_000235_010 Hb_004800_020--Hb_000175_610 Hb_004800_020--Hb_173281_010 Hb_004800_020--Hb_001780_070 Hb_011909_110 Hb_011909_110 Hb_004800_020--Hb_011909_110 Hb_011004_010 Hb_011004_010 Hb_000175_610--Hb_011004_010 Hb_000260_580 Hb_000260_580 Hb_000175_610--Hb_000260_580 Hb_003371_100 Hb_003371_100 Hb_000175_610--Hb_003371_100 Hb_000742_270 Hb_000742_270 Hb_000175_610--Hb_000742_270 Hb_001507_070 Hb_001507_070 Hb_000175_610--Hb_001507_070 Hb_148121_010 Hb_148121_010 Hb_000175_610--Hb_148121_010 Hb_003050_070 Hb_003050_070 Hb_000235_010--Hb_003050_070 Hb_000803_050 Hb_000803_050 Hb_000235_010--Hb_000803_050 Hb_000235_010--Hb_001507_070 Hb_000453_300 Hb_000453_300 Hb_000235_010--Hb_000453_300 Hb_003211_050 Hb_003211_050 Hb_000235_010--Hb_003211_050 Hb_000235_010--Hb_000175_610 Hb_002450_070 Hb_002450_070 Hb_000545_170--Hb_002450_070 Hb_001959_260 Hb_001959_260 Hb_000545_170--Hb_001959_260 Hb_088538_010 Hb_088538_010 Hb_000545_170--Hb_088538_010 Hb_000563_560 Hb_000563_560 Hb_000545_170--Hb_000563_560 Hb_000545_170--Hb_003913_140 Hb_104010_010 Hb_104010_010 Hb_000545_170--Hb_104010_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8245 1.24539 20.2994 5.57721 3.50945 5.49134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
236.768 68.7061 169.75 8.97374 2.72103

CAGE analysis