Hb_003291_010

Information

Type -
Description -
Location Contig3291: 15044-34391
Sequence    

Annotation

kegg
ID rcu:RCOM_0520240
description ATP-dependent protease La, putative (EC:3.4.21.53)
nr
ID XP_002528799.1
description ATP-dependent protease La, putative [Ricinus communis]
swissprot
ID O04979
description Lon protease homolog 2, peroxisomal OS=Spinacia oleracea PE=2 SV=2
trembl
ID B9SS30
description Lon protease homolog 2, peroxisomal OS=Ricinus communis GN=RCOM_0520240 PE=3 SV=1
Gene Ontology
ID GO:0005782
description lon protease homolog peroxisomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34599: 15163-34321 , PASA_asmbl_34601: 18161-20583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003291_010 0.0 - - ATP-dependent protease La, putative [Ricinus communis]
2 Hb_003142_020 0.0714132145 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
3 Hb_001486_180 0.0748213063 - - hypothetical protein B456_007G260200 [Gossypium raimondii]
4 Hb_000977_110 0.0757993919 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Jatropha curcas]
5 Hb_001318_270 0.0819454034 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
6 Hb_000227_120 0.0852002945 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003688_150 0.0878946189 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
8 Hb_000976_300 0.0888735595 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
9 Hb_020805_130 0.0901945069 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_000165_160 0.0904409547 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
11 Hb_005463_100 0.0909869081 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
12 Hb_001007_060 0.0929824475 - - Transcriptional corepressor SEUSS [Glycine soja]
13 Hb_001696_010 0.0971155859 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
14 Hb_000783_020 0.0982558069 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
15 Hb_003371_090 0.0998191987 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
16 Hb_012325_020 0.1005112329 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
17 Hb_001902_140 0.100909673 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
18 Hb_000684_470 0.1015919375 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
19 Hb_001507_040 0.1018788092 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009486_140 0.1019689638 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]

Gene co-expression network

sample Hb_003291_010 Hb_003291_010 Hb_003142_020 Hb_003142_020 Hb_003291_010--Hb_003142_020 Hb_001486_180 Hb_001486_180 Hb_003291_010--Hb_001486_180 Hb_000977_110 Hb_000977_110 Hb_003291_010--Hb_000977_110 Hb_001318_270 Hb_001318_270 Hb_003291_010--Hb_001318_270 Hb_000227_120 Hb_000227_120 Hb_003291_010--Hb_000227_120 Hb_003688_150 Hb_003688_150 Hb_003291_010--Hb_003688_150 Hb_003142_020--Hb_000227_120 Hb_001007_060 Hb_001007_060 Hb_003142_020--Hb_001007_060 Hb_002725_120 Hb_002725_120 Hb_003142_020--Hb_002725_120 Hb_003106_060 Hb_003106_060 Hb_003142_020--Hb_003106_060 Hb_009767_110 Hb_009767_110 Hb_003142_020--Hb_009767_110 Hb_001486_180--Hb_000977_110 Hb_000999_050 Hb_000999_050 Hb_001486_180--Hb_000999_050 Hb_006615_020 Hb_006615_020 Hb_001486_180--Hb_006615_020 Hb_004607_050 Hb_004607_050 Hb_001486_180--Hb_004607_050 Hb_001486_180--Hb_003688_150 Hb_000976_300 Hb_000976_300 Hb_000977_110--Hb_000976_300 Hb_000977_110--Hb_000999_050 Hb_000977_110--Hb_004607_050 Hb_004837_130 Hb_004837_130 Hb_000977_110--Hb_004837_130 Hb_012325_020 Hb_012325_020 Hb_001318_270--Hb_012325_020 Hb_002110_150 Hb_002110_150 Hb_001318_270--Hb_002110_150 Hb_001726_020 Hb_001726_020 Hb_001318_270--Hb_001726_020 Hb_000041_100 Hb_000041_100 Hb_001318_270--Hb_000041_100 Hb_050622_050 Hb_050622_050 Hb_001318_270--Hb_050622_050 Hb_000783_020 Hb_000783_020 Hb_001318_270--Hb_000783_020 Hb_000227_120--Hb_003106_060 Hb_000684_470 Hb_000684_470 Hb_000227_120--Hb_000684_470 Hb_002660_010 Hb_002660_010 Hb_000227_120--Hb_002660_010 Hb_009382_010 Hb_009382_010 Hb_000227_120--Hb_009382_010 Hb_003688_150--Hb_000783_020 Hb_000120_460 Hb_000120_460 Hb_003688_150--Hb_000120_460 Hb_001619_070 Hb_001619_070 Hb_003688_150--Hb_001619_070 Hb_003688_150--Hb_001318_270 Hb_103118_010 Hb_103118_010 Hb_003688_150--Hb_103118_010 Hb_086639_040 Hb_086639_040 Hb_003688_150--Hb_086639_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6969 19.3762 11.06 14.2564 20.2965 19.5113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.1829 22.5611 45.0251 22.6775 28.2351

CAGE analysis