Hb_003291_020

Information

Type -
Description -
Location Contig3291: 38061-49719
Sequence    

Annotation

kegg
ID rcu:RCOM_0520230
description ATP synthase delta chain, mitochondrial, putative (EC:3.6.3.14)
nr
ID XP_012075179.1
description PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
swissprot
ID Q40089
description ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1 SV=1
trembl
ID B9SS29
description ATP synthase delta chain, mitochondrial, putative OS=Ricinus communis GN=RCOM_0520230 PE=3 SV=1
Gene Ontology
ID GO:0000275
description atp synthase subunit delta mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34604: 38108-49125 , PASA_asmbl_34605: 43243-43769
cDNA
(Sanger)
(ID:Location)		 050_C20.ab1: 38621-49062

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003291_020 0.0 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
2 Hb_148209_010 0.0550034782 - - RAS-related GTP-binding family protein [Populus trichocarpa]
3 Hb_001123_160 0.0814839546 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
4 Hb_000056_250 0.0888261992 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
5 Hb_000384_120 0.0897264905 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
6 Hb_003126_070 0.0910313548 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
7 Hb_003880_030 0.0915791521 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
8 Hb_004672_010 0.0923427312 - - ecotropic viral integration site, putative [Ricinus communis]
9 Hb_000673_020 0.0925598986 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
10 Hb_008232_010 0.0932626258 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
11 Hb_000922_040 0.0936786192 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
12 Hb_000417_260 0.0949359522 - - protein with unknown function [Ricinus communis]
13 Hb_002016_080 0.1016051311 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
14 Hb_000175_030 0.1016419458 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
15 Hb_130719_010 0.1044019421 - - V-type proton ATPase subunit E [Hevea brasiliensis]
16 Hb_072922_020 0.1046764674 - - SNARE-like superfamily protein [Theobroma cacao]
17 Hb_001410_060 0.1053038186 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
18 Hb_000046_350 0.1071460851 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001222_080 0.1075387498 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
20 Hb_001053_140 0.1076445546 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_003291_020 Hb_003291_020 Hb_148209_010 Hb_148209_010 Hb_003291_020--Hb_148209_010 Hb_001123_160 Hb_001123_160 Hb_003291_020--Hb_001123_160 Hb_000056_250 Hb_000056_250 Hb_003291_020--Hb_000056_250 Hb_000384_120 Hb_000384_120 Hb_003291_020--Hb_000384_120 Hb_003126_070 Hb_003126_070 Hb_003291_020--Hb_003126_070 Hb_003880_030 Hb_003880_030 Hb_003291_020--Hb_003880_030 Hb_002303_060 Hb_002303_060 Hb_148209_010--Hb_002303_060 Hb_148209_010--Hb_001123_160 Hb_000922_040 Hb_000922_040 Hb_148209_010--Hb_000922_040 Hb_000563_200 Hb_000563_200 Hb_148209_010--Hb_000563_200 Hb_148209_010--Hb_000384_120 Hb_008232_010 Hb_008232_010 Hb_001123_160--Hb_008232_010 Hb_003622_040 Hb_003622_040 Hb_001123_160--Hb_003622_040 Hb_001123_160--Hb_000563_200 Hb_000300_430 Hb_000300_430 Hb_001123_160--Hb_000300_430 Hb_000096_150 Hb_000096_150 Hb_000056_250--Hb_000096_150 Hb_005278_040 Hb_005278_040 Hb_000056_250--Hb_005278_040 Hb_027751_060 Hb_027751_060 Hb_000056_250--Hb_027751_060 Hb_000417_260 Hb_000417_260 Hb_000056_250--Hb_000417_260 Hb_130719_010 Hb_130719_010 Hb_000056_250--Hb_130719_010 Hb_072922_020 Hb_072922_020 Hb_000384_120--Hb_072922_020 Hb_000384_120--Hb_000417_260 Hb_000384_120--Hb_003880_030 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_002324_010 Hb_002324_010 Hb_000384_120--Hb_002324_010 Hb_076233_040 Hb_076233_040 Hb_003126_070--Hb_076233_040 Hb_002284_230 Hb_002284_230 Hb_003126_070--Hb_002284_230 Hb_003126_070--Hb_000300_430 Hb_003126_070--Hb_008232_010 Hb_003126_070--Hb_001123_160 Hb_000673_020 Hb_000673_020 Hb_003880_030--Hb_000673_020 Hb_003880_030--Hb_072922_020 Hb_001979_020 Hb_001979_020 Hb_003880_030--Hb_001979_020 Hb_001329_150 Hb_001329_150 Hb_003880_030--Hb_001329_150 Hb_003880_030--Hb_000922_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.484 16.9988 24.7024 76.9264 11.553 20.1964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.2148 110.051 79.4627 58.4883 48.2553

CAGE analysis