Hb_003292_050

Information

Type transcription factor
Description TF Family: TUB
Location Contig3292: 36554-49202
Sequence    

Annotation

kegg
ID rcu:RCOM_0107210
description hypothetical protein
nr
ID XP_012075824.1
description PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
swissprot
ID Q93VI8
description Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1
trembl
ID A0A067KFB3
description Tubby-like F-box protein OS=Jatropha curcas GN=JCGZ_10577 PE=3 SV=1
Gene Ontology
ID GO:0044424
description tubby-like f-box protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34610: 36466-49219 , PASA_asmbl_34611: 48316-48532 , PASA_asmbl_34613: 48687-48881 , PASA_asmbl_34614: 37629-37784 , PASA_asmbl_34615: 44433-44585
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003292_050 0.0 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
2 Hb_010362_030 0.0810034281 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
3 Hb_000402_120 0.0830731663 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
4 Hb_001140_030 0.0847600898 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
5 Hb_032264_060 0.086908228 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
6 Hb_000922_020 0.0871209416 - - protein binding protein, putative [Ricinus communis]
7 Hb_000042_340 0.0889231669 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
8 Hb_000139_190 0.0924199261 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
9 Hb_001636_050 0.0937281836 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
10 Hb_000679_340 0.0959980066 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
11 Hb_003929_140 0.0964467885 - - DNA binding protein, putative [Ricinus communis]
12 Hb_000028_510 0.0971991341 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
13 Hb_005523_020 0.0978428053 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
14 Hb_010998_040 0.0979162067 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
15 Hb_001405_190 0.0982469828 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
16 Hb_008695_110 0.0999070091 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
17 Hb_012384_030 0.1014350512 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
18 Hb_000856_420 0.1024762316 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_001301_130 0.1026358971 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
20 Hb_143766_110 0.1031333671 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003292_050 Hb_003292_050 Hb_010362_030 Hb_010362_030 Hb_003292_050--Hb_010362_030 Hb_000402_120 Hb_000402_120 Hb_003292_050--Hb_000402_120 Hb_001140_030 Hb_001140_030 Hb_003292_050--Hb_001140_030 Hb_032264_060 Hb_032264_060 Hb_003292_050--Hb_032264_060 Hb_000922_020 Hb_000922_020 Hb_003292_050--Hb_000922_020 Hb_000042_340 Hb_000042_340 Hb_003292_050--Hb_000042_340 Hb_001405_190 Hb_001405_190 Hb_010362_030--Hb_001405_190 Hb_010998_040 Hb_010998_040 Hb_010362_030--Hb_010998_040 Hb_143766_110 Hb_143766_110 Hb_010362_030--Hb_143766_110 Hb_000567_190 Hb_000567_190 Hb_010362_030--Hb_000567_190 Hb_010362_030--Hb_001140_030 Hb_000139_190 Hb_000139_190 Hb_010362_030--Hb_000139_190 Hb_012384_030 Hb_012384_030 Hb_000402_120--Hb_012384_030 Hb_000402_120--Hb_032264_060 Hb_001776_060 Hb_001776_060 Hb_000402_120--Hb_001776_060 Hb_001636_050 Hb_001636_050 Hb_000402_120--Hb_001636_050 Hb_013394_030 Hb_013394_030 Hb_000402_120--Hb_013394_030 Hb_032202_080 Hb_032202_080 Hb_000402_120--Hb_032202_080 Hb_001952_120 Hb_001952_120 Hb_001140_030--Hb_001952_120 Hb_001140_030--Hb_010998_040 Hb_001140_030--Hb_032264_060 Hb_004631_190 Hb_004631_190 Hb_001140_030--Hb_004631_190 Hb_005965_030 Hb_005965_030 Hb_001140_030--Hb_005965_030 Hb_001140_030--Hb_001405_190 Hb_000803_070 Hb_000803_070 Hb_032264_060--Hb_000803_070 Hb_003633_070 Hb_003633_070 Hb_032264_060--Hb_003633_070 Hb_003927_040 Hb_003927_040 Hb_032264_060--Hb_003927_040 Hb_001751_140 Hb_001751_140 Hb_032264_060--Hb_001751_140 Hb_001754_030 Hb_001754_030 Hb_032264_060--Hb_001754_030 Hb_000922_020--Hb_001405_190 Hb_005288_080 Hb_005288_080 Hb_000922_020--Hb_005288_080 Hb_000679_340 Hb_000679_340 Hb_000922_020--Hb_000679_340 Hb_022256_060 Hb_022256_060 Hb_000922_020--Hb_022256_060 Hb_000922_020--Hb_032202_080 Hb_001077_030 Hb_001077_030 Hb_000922_020--Hb_001077_030 Hb_000983_120 Hb_000983_120 Hb_000042_340--Hb_000983_120 Hb_000599_080 Hb_000599_080 Hb_000042_340--Hb_000599_080 Hb_001652_080 Hb_001652_080 Hb_000042_340--Hb_001652_080 Hb_000042_340--Hb_010362_030 Hb_000525_100 Hb_000525_100 Hb_000042_340--Hb_000525_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7514 12.8147 12.7684 4.87977 12.6258 8.58479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.19363 5.57921 6.27564 3.28133 8.92948

CAGE analysis