Hb_003292_060

Information

Type -
Description -
Location Contig3292: 55903-56681
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022280mg
description hypothetical protein
nr
ID XP_012075823.1
description PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
swissprot
ID Q41558
description Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2
trembl
ID A0A067KR96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10575 PE=4 SV=1
Gene Ontology
ID GO:0043565
description transcription factor tga5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003292_060 0.0 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
2 Hb_000589_370 0.1016543452 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
3 Hb_002234_230 0.1254071465 - - hypothetical protein JCGZ_26141 [Jatropha curcas]
4 Hb_001124_030 0.1442040319 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
5 Hb_004117_250 0.1826286079 - - PREDICTED: expansin-A8-like [Populus euphratica]
6 Hb_004524_060 0.227333004 - - hypothetical protein VITISV_039334 [Vitis vinifera]
7 Hb_000787_010 0.2511100224 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
8 Hb_099990_030 0.2632334935 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
9 Hb_004524_070 0.2661677539 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
10 Hb_004968_010 0.273463367 - - PREDICTED: receptor-like protein 12 isoform X1 [Populus euphratica]
11 Hb_021650_050 0.2770472295 - - hypothetical protein RCOM_0852210 [Ricinus communis]
12 Hb_009302_010 0.2945250509 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_049884_010 0.3084487466 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_002235_180 0.3112751422 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
15 Hb_003768_060 0.3137619775 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
16 Hb_075351_010 0.3425973912 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
17 Hb_028639_040 0.3557412485 - - PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]
18 Hb_004800_210 0.3557688799 - - hypothetical protein POPTR_0007s12780g [Populus trichocarpa]
19 Hb_004021_090 0.3574559959 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
20 Hb_114250_010 0.3603405404 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003292_060 Hb_003292_060 Hb_000589_370 Hb_000589_370 Hb_003292_060--Hb_000589_370 Hb_002234_230 Hb_002234_230 Hb_003292_060--Hb_002234_230 Hb_001124_030 Hb_001124_030 Hb_003292_060--Hb_001124_030 Hb_004117_250 Hb_004117_250 Hb_003292_060--Hb_004117_250 Hb_004524_060 Hb_004524_060 Hb_003292_060--Hb_004524_060 Hb_000787_010 Hb_000787_010 Hb_003292_060--Hb_000787_010 Hb_000589_370--Hb_002234_230 Hb_000589_370--Hb_004117_250 Hb_000589_370--Hb_004524_060 Hb_021650_050 Hb_021650_050 Hb_000589_370--Hb_021650_050 Hb_004524_070 Hb_004524_070 Hb_000589_370--Hb_004524_070 Hb_002234_230--Hb_001124_030 Hb_002234_230--Hb_021650_050 Hb_002234_230--Hb_004117_250 Hb_002234_230--Hb_004524_070 Hb_009302_010 Hb_009302_010 Hb_001124_030--Hb_009302_010 Hb_001124_030--Hb_000589_370 Hb_004968_010 Hb_004968_010 Hb_001124_030--Hb_004968_010 Hb_001124_030--Hb_004117_250 Hb_004117_250--Hb_004524_060 Hb_002897_020 Hb_002897_020 Hb_004117_250--Hb_002897_020 Hb_004117_250--Hb_000787_010 Hb_049884_010 Hb_049884_010 Hb_004117_250--Hb_049884_010 Hb_028639_040 Hb_028639_040 Hb_004524_060--Hb_028639_040 Hb_004524_060--Hb_002897_020 Hb_004524_060--Hb_021650_050 Hb_099990_030 Hb_099990_030 Hb_000787_010--Hb_099990_030 Hb_004021_090 Hb_004021_090 Hb_000787_010--Hb_004021_090 Hb_003768_060 Hb_003768_060 Hb_000787_010--Hb_003768_060 Hb_000787_010--Hb_028639_040 Hb_000787_010--Hb_000589_370 Hb_002235_180 Hb_002235_180 Hb_000787_010--Hb_002235_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0348985 0.0293899 0.0280068 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis