Hb_003294_090

Information

Type -
Description -
Location Contig3294: 134986-156314
Sequence    

Annotation

kegg
ID rcu:RCOM_0888260
description hypothetical protein
nr
ID XP_002521175.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5A6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0888260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34633: 121367-177753 , PASA_asmbl_34634: 136795-172075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003294_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003253_040 0.0697441689 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
3 Hb_005901_020 0.0760318734 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
4 Hb_002740_110 0.0837247827 - - PREDICTED: phytochrome A [Jatropha curcas]
5 Hb_010174_110 0.0837482256 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
6 Hb_015175_020 0.0845762482 - - hypothetical protein JCGZ_14452 [Jatropha curcas]
7 Hb_002063_020 0.0866702114 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
8 Hb_002667_050 0.0872144663 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
9 Hb_001199_100 0.0872845674 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
10 Hb_004449_080 0.0876759239 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
11 Hb_000398_120 0.0877348849 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3-like isoform X4 [Gossypium raimondii]
12 Hb_000028_390 0.0877376509 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
13 Hb_000592_030 0.0877560454 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
14 Hb_006660_010 0.0890901513 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
15 Hb_164898_010 0.0918366299 - - Cysteine-rich protein, putative [Theobroma cacao]
16 Hb_002942_100 0.0919317478 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
17 Hb_000388_090 0.0935258214 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
18 Hb_006909_010 0.0939878613 - - 5-oxoprolinase, putative [Ricinus communis]
19 Hb_001449_040 0.0947591741 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
20 Hb_004020_020 0.0954995888 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820 [Jatropha curcas]

Gene co-expression network

sample Hb_003294_090 Hb_003294_090 Hb_003253_040 Hb_003253_040 Hb_003294_090--Hb_003253_040 Hb_005901_020 Hb_005901_020 Hb_003294_090--Hb_005901_020 Hb_002740_110 Hb_002740_110 Hb_003294_090--Hb_002740_110 Hb_010174_110 Hb_010174_110 Hb_003294_090--Hb_010174_110 Hb_015175_020 Hb_015175_020 Hb_003294_090--Hb_015175_020 Hb_002063_020 Hb_002063_020 Hb_003294_090--Hb_002063_020 Hb_003253_040--Hb_002740_110 Hb_003253_040--Hb_010174_110 Hb_001199_100 Hb_001199_100 Hb_003253_040--Hb_001199_100 Hb_002942_100 Hb_002942_100 Hb_003253_040--Hb_002942_100 Hb_003253_040--Hb_002063_020 Hb_004143_130 Hb_004143_130 Hb_003253_040--Hb_004143_130 Hb_005901_020--Hb_001199_100 Hb_001496_070 Hb_001496_070 Hb_005901_020--Hb_001496_070 Hb_005901_020--Hb_003253_040 Hb_001449_040 Hb_001449_040 Hb_005901_020--Hb_001449_040 Hb_004032_380 Hb_004032_380 Hb_005901_020--Hb_004032_380 Hb_002740_110--Hb_010174_110 Hb_000028_280 Hb_000028_280 Hb_002740_110--Hb_000028_280 Hb_004994_220 Hb_004994_220 Hb_002740_110--Hb_004994_220 Hb_002740_110--Hb_004032_380 Hb_002740_110--Hb_004143_130 Hb_000002_010 Hb_000002_010 Hb_010174_110--Hb_000002_010 Hb_000107_490 Hb_000107_490 Hb_010174_110--Hb_000107_490 Hb_010174_110--Hb_004143_130 Hb_010174_110--Hb_004994_220 Hb_000999_050 Hb_000999_050 Hb_015175_020--Hb_000999_050 Hb_000028_480 Hb_000028_480 Hb_015175_020--Hb_000028_480 Hb_004724_150 Hb_004724_150 Hb_015175_020--Hb_004724_150 Hb_004607_050 Hb_004607_050 Hb_015175_020--Hb_004607_050 Hb_000832_020 Hb_000832_020 Hb_015175_020--Hb_000832_020 Hb_000388_090 Hb_000388_090 Hb_002063_020--Hb_000388_090 Hb_000366_040 Hb_000366_040 Hb_002063_020--Hb_000366_040 Hb_002099_080 Hb_002099_080 Hb_002063_020--Hb_002099_080 Hb_002063_020--Hb_002942_100 Hb_000352_190 Hb_000352_190 Hb_002063_020--Hb_000352_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.733 12.3235 6.07974 11.8649 15.7188 22.8999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8354 8.49845 22.777 23.872 18.5078

CAGE analysis