Hb_003297_020

Information

Type -
Description -
Location Contig3297: 15249-20577
Sequence    

Annotation

kegg
ID -
description -
nr
ID ABK96596.1
description unknown [Populus trichocarpa x Populus deltoides]
swissprot
ID -
description -
trembl
ID A9PJP3
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003297_020 0.0 - - unknown [Populus trichocarpa x Populus deltoides]
2 Hb_070385_010 0.1659776811 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
3 Hb_007136_020 0.1747687786 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
4 Hb_101020_010 0.179050346 - - -
5 Hb_002249_110 0.1796516093 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
6 Hb_124961_010 0.1815902095 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
7 Hb_001767_120 0.1824661618 - - -
8 Hb_134956_010 0.1837383315 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
9 Hb_176117_010 0.1869558203 - - Cold-inducible RNA-binding protein [Morus notabilis]
10 Hb_071923_010 0.1874798217 - - -
11 Hb_171619_010 0.1882468812 - - protein binding protein, putative [Ricinus communis]
12 Hb_130134_030 0.18835922 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
13 Hb_002411_130 0.1984496161 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
14 Hb_077211_010 0.2016460296 - - PREDICTED: lariat debranching enzyme-like [Jatropha curcas]
15 Hb_003666_010 0.2076226533 - - hypothetical protein JCGZ_12303 [Jatropha curcas]
16 Hb_183980_010 0.2083812315 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
17 Hb_181320_010 0.2112981832 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
18 Hb_170532_010 0.2124384706 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
19 Hb_004662_010 0.2124807531 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
20 Hb_000441_160 0.2142849086 - - ARF GTPase activator, putative [Ricinus communis]

Gene co-expression network

sample Hb_003297_020 Hb_003297_020 Hb_070385_010 Hb_070385_010 Hb_003297_020--Hb_070385_010 Hb_007136_020 Hb_007136_020 Hb_003297_020--Hb_007136_020 Hb_101020_010 Hb_101020_010 Hb_003297_020--Hb_101020_010 Hb_002249_110 Hb_002249_110 Hb_003297_020--Hb_002249_110 Hb_124961_010 Hb_124961_010 Hb_003297_020--Hb_124961_010 Hb_001767_120 Hb_001767_120 Hb_003297_020--Hb_001767_120 Hb_070385_010--Hb_002249_110 Hb_130134_030 Hb_130134_030 Hb_070385_010--Hb_130134_030 Hb_134956_010 Hb_134956_010 Hb_070385_010--Hb_134956_010 Hb_088428_010 Hb_088428_010 Hb_070385_010--Hb_088428_010 Hb_130134_020 Hb_130134_020 Hb_070385_010--Hb_130134_020 Hb_007136_020--Hb_124961_010 Hb_007136_020--Hb_101020_010 Hb_170532_010 Hb_170532_010 Hb_007136_020--Hb_170532_010 Hb_006816_340 Hb_006816_340 Hb_007136_020--Hb_006816_340 Hb_007136_020--Hb_070385_010 Hb_009693_030 Hb_009693_030 Hb_101020_010--Hb_009693_030 Hb_001916_060 Hb_001916_060 Hb_101020_010--Hb_001916_060 Hb_000160_150 Hb_000160_150 Hb_101020_010--Hb_000160_150 Hb_101020_010--Hb_124961_010 Hb_000295_090 Hb_000295_090 Hb_002249_110--Hb_000295_090 Hb_071923_010 Hb_071923_010 Hb_002249_110--Hb_071923_010 Hb_115578_010 Hb_115578_010 Hb_002249_110--Hb_115578_010 Hb_001385_090 Hb_001385_090 Hb_002249_110--Hb_001385_090 Hb_124961_010--Hb_170532_010 Hb_171619_010 Hb_171619_010 Hb_124961_010--Hb_171619_010 Hb_004570_050 Hb_004570_050 Hb_124961_010--Hb_004570_050 Hb_124961_010--Hb_000160_150 Hb_005714_130 Hb_005714_130 Hb_001767_120--Hb_005714_130 Hb_001752_040 Hb_001752_040 Hb_001767_120--Hb_001752_040 Hb_002508_010 Hb_002508_010 Hb_001767_120--Hb_002508_010 Hb_128998_010 Hb_128998_010 Hb_001767_120--Hb_128998_010 Hb_121467_010 Hb_121467_010 Hb_001767_120--Hb_121467_010 Hb_171788_010 Hb_171788_010 Hb_001767_120--Hb_171788_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.7927 15.1405 39.6525 21.6381 55.3859 167.594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2698 19.904 5.35456 2.86625 1.36911

CAGE analysis